KEGG   Garra rufa (doctor fish): 141334032
Entry
141334032         CDS       T11039                                 
Symbol
kdm5a
Name
(RefSeq) lysine-specific demethylase 5A
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
grf  Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:grf00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:grf01009]
    141334032 (kdm5a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:grf03036]
    141334032 (kdm5a)
Enzymes [BR:grf01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     141334032 (kdm5a)
Protein phosphatases and associated proteins [BR:grf01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     141334032 (kdm5a)
Chromosome and associated proteins [BR:grf03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    141334032 (kdm5a)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_5 DUF4484 KAR
Other DBs
NCBI-GeneID: 141334032
NCBI-ProteinID: XP_073695287
LinkDB
Position
4:complement(40780346..40814976)
AA seq 1684 aa
MALFREFEAPPECPVFEPSWQDFSDPFGFIHKIRDIAENTGICKIRPPQGWQPPFACDVR
SFRFTPRIQRLNELEALTRVKLNFLDQMAKFWELQGCKLRLPHVERKVLDLYLLSKLVSA
EGGFEEVCREKRWSKIGSRMGFPGGKGVGSLLRSHFERILYPYELFRSGATLSSVHKLYP
DAADPEDLDEGIGGGEEEGADEDEEKERRAERRSPRRLKDERENTEPKAVQVFSGGHQML
GLDIMSAEDESFLRKQKHMRAQAFAIKMRPRKEILEVNYIDLYMCMACGRGDEEDRLLLC
DGCDDSYHTFCLIPPLQDVPRGDWRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMAD
HFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDVGSGFPVRDGKRKL
IGDEDEYANSGWNLNNMPVLEQSVLTHISGDISGMKLPWLYVGMCFSSFCWHIEDHWSYS
INYLHWGEPKTWYGVPAHAAEQLESVMKTVAPELFDSQPDLLHQLVTLMNPNLLMEHGVP
VYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVAHYRRLQRYCVF
SHEELVCKMAADPESLDVALAAAVVRELSDMIEEESRLRAAVQEMGVLSSEQEVFELVPD
DERQCWKCKTTCFLSALTCSCSPERLVCLHHAVQLCSCAAANKCLRFRYDQDEFPAMLYG
VKSRAQSYDTWAKRVTEALAADSKNKKDLIELKVLMEDAEDRKYPENNLLRSLRDTVKEA
ETCSSVAQLLLSHKQRHKERPESSAQKARSKLTVEELKVFVEQLYRLPCVISQARHVKEL
LESVEDFHERAQAALTDQTPDSSKLQALLDLGSGLDVELPELPRLKQELQQARWLDEVRL
TLMEPQRVTLELMKRLIDSGVGLAPHHAVEKAMAELQELLTVSEHWEERARACLQARPRH
SLLTLESIVMEAKNIPAYLPNVLALRDALHKAKEWTAKVEAIQNGSSYSYLEQLEGLLAR
GRSIPVRLEALPQVESQVASARAWRERTARTFLKKNSTYTLLQVLSPRVDIGVYGTSKSK
RKRVKELLEKERGLDLEGLSDLEESAEDARDPASVVAAFKARERQELEAIHSLRAANLAK
MAMVERIEEVKFCLCRKTAGGFMLQCELCKDWFHGACVPLPKAGSQKKLVAGWQGGSKES
KFLCPLCQRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAMGWQDRARQALATDE
LSSALAKLSVLSQRMVELAAREKTEKIINAELQKAAANPDLQGHIQTFQQAGFSRATSPR
PSMDYDDEETDSDEDIRETYGYDVKDSGEVKPYLFCDEEIPVKSEEVVSHMWPTTPSFCA
EHAYSSASKSCPQNQSAPRKQPRKTPLVPRSLEPPVLELSPAAKAQLEELMMEGDLLEVS
LDETQHIWRILQATHPPSEDKFLQVMEPEDSLLDKPLKMKVKDAEKKRKRKLERAEQQLL
LAAGGVEGRSKSKDMKRVLELKPKKKKLKLSPDKSRELKQLAKRLAKEEKERKRKEKAAT
KAEFPKEGLEKKSRKILDIPSKYDWSGAEDSNDENAVCAAKNCQRPCKDKVDWVQCDGGC
DEWFHQVCVGVTCEMAENEDYICLACSRKAAAVKVGAETVVMSSPVCGGPIVPPLPQNQP
QEGS
NT seq 5055 nt   +upstreamnt  +downstreamnt
atggcgctgttccgcgagttcgaggctccgccggagtgtccggtgttcgagcccagctgg
caggacttcagcgatccgttcggcttcatccacaagatccgggacatcgccgagaacacg
ggcatctgcaagatcagacctcctcagggctggcagcctccgttcgcctgtgacgttcgc
agtttccgcttcactcctcgaatccagcggctcaatgagctggaggccctcaccagagtc
aagctcaacttcctggaccagatggccaagttctgggagctgcagggctgcaaactgcgc
ctgcctcacgtggagaggaaagtgctggacctctacctgctcagcaagctggtgtctgca
gaaggaggctttgaggaggtctgtagggagaagcgctggtctaagatcggcagccgcatg
ggttttcctggcggtaaaggtgtgggatctctgctgcgctctcacttcgagcggatcctg
tatccgtatgagctcttccgctccggagccacgctgagcagcgttcacaagctgtaccca
gacgccgctgaccccgaggacctggacgaaggcatcggcggcggagaggaagagggtgcg
gatgaggatgaggagaaggagagacgagcggagagacgttcccctcgacggctgaaggac
gagagagaaaacacggagcccaaagcggtgcaggtgttcagcggcggccatcagatgctg
gggctagacatcatgagcgcagaggatgagagcttcctcaggaaacagaagcacatgagg
gctcaggcgtttgccattaaaatgcgtccacgcaaggagattctggaggtcaattatatc
gacctgtacatgtgtatggcgtgtgggcggggcgacgaggaggaccgcctcctgctgtgt
gacggctgtgacgacagctaccacaccttctgcctgatcccgccgctgcaggacgtgccc
agaggagactggcgctgccctaagtgtgtggcagaggagtgcagcaagcctcgggaggcg
ttcggcttcgagcaggccgtcagagagtacaccctgcagagcttcggagagatggctgac
cacttcaagtctgactacttcaacatgcctgttcacatggtgccgacggagctggtggag
aaggagttctggcgtctggtcagcagcatcgaggaggacgtgatcgtggagtacggcgcc
gatatcagctcaaaggacgtgggcagcgggttccccgtgagagacggcaagaggaaactc
atcggagacgaggatgagtacgcaaactcgggctggaacctgaacaacatgccggtgctg
gagcagtcggtgctgacgcacatcagcggagacatcagcggcatgaagctgccctggctc
tatgtgggcatgtgcttctcctccttctgctggcacatcgaggaccactggagctactcc
atcaactacctgcactggggcgaacccaagacctggtacggcgttccagcgcacgccgcc
gagcagctggagtccgtgatgaagacggtggccccggagctgttcgactctcagccggac
ctcctgcaccagctggtgaccctgatgaaccctaacctcctgatggagcacggcgtcccg
gtgtaccggaccaatcagtgcgcgggagagttcgtggtcaccttccccagagcctatcac
agcggcttcaatcaaggctacaactttgctgaagccgtcaacttctgcactgcagactgg
ctgcccatcggcaggcagtgtgtggcgcattaccggcgtctgcagcgctactgcgtcttc
tcccacgaggagctggtgtgtaagatggcggccgatccggagagtctggacgtggcgctg
gcggcggctgtggttcgagagctcagcgacatgatcgaggaggagagccgactgagagcg
gcagtgcaggagatgggggtgctgtcctcggagcaggaggtgtttgagctggtgcccgat
gacgagcggcagtgctggaagtgcaagaccacctgcttcctgtcggcgctcacctgcagc
tgcagtccggagcgtctggtgtgtctgcatcacgcggtccagctctgcagctgcgcagcc
gctaacaagtgcctgcggttcaggtacgatcaggacgagtttcccgccatgctctacggg
gtgaagtcccgagcccagtcttacgacacctgggccaagagggtcacggaggcactggcg
gccgacagcaagaacaagaaagatctgatcgagctgaaagtgctgatggaggacgctgag
gacaggaagtacccagagaacaacctgctgcgcagcctcagagacacggtgaaggaggcc
gagacctgctcctctgtggctcaactgctgctcagccacaaacagaggcacaaagagcgt
cccgagagcagcgcacagaaagcacgcagcaaactgacggtggaggagctgaaggtgttt
gtggagcagctctaccgcctgccctgcgtcatcagccaggcccgacacgtcaaagagctg
ctggagagcgtggaggactttcacgagcgggctcaggcggcgctgacggaccagactccg
gactccagtaagctgcaggctctcctggacctgggctcagggctggatgtggagctgccg
gagctgcctcgtctcaagcaggagctgcagcaggcgcgctggctggacgaggtgcggctg
acgctgatggagccgcagcgcgtcacactggagctgatgaagcggctgatcgactctggg
gtgggtctggctcctcatcacgccgtggagaaggccatggccgagctgcaggagctgctg
acggtgtctgagcactgggaggagcgggcgcgcgcgtgtctgcaggccaggcctcgccac
agtctgctgacgctggaaagtatcgtaatggaggccaagaatatcccagcgtacctgccc
aatgttctggccctcagagacgccctgcacaaagccaaagagtggacggccaaagtggag
gccattcagaacggcagtagctactcctacctggagcagctggagggtctgttagccaga
ggacgctccatcccggtccgattagaggcgctgccgcaggtggagtcacaggtggcctct
gctagagcctggagggagagaaccgcccgcacctttctcaagaagaactccacctacaca
ctactgcaggtgctcagtccgcgtgtggacatcggcgtgtacggcaccagcaagagcaaa
cgcaagcgtgtcaaagagctgctggagaaggagcgcgggctggatctggagggtctgagc
gatctggaggagagtgcggaggacgctcgtgaccctgcttccgtcgtggccgccttcaaa
gcccgagagcggcaggagctggaggccatccactcgctccgcgccgccaacctggccaag
atggctatggtggagcgcatcgaggaggtcaagttctgcctgtgccggaagacggccggc
ggcttcatgctgcagtgcgagctgtgcaaagactggttccacggcgcctgcgtgccctta
cccaaagccggctcgcagaagaagctggtggccggatggcagggcggcagcaaagagtcc
aagttcctgtgcccgctgtgccagcgctcccgacggccccgactggagaccatcctgtcc
ctgctggtgtctctgcagaagctgccggtgcggctgcccgagggagaggcgctgcagtgt
ctgacggagagggccatgggctggcaggaccgcgcacgacaggccctggccaccgacgag
ctctcctccgctctggccaagctgtccgtgctcagccagcgcatggtggagctcgccgcc
cgagagaagaccgagaagatcatcaacgccgagctgcagaaggcggccgccaacccggac
ctgcaggggcacatccagaccttccagcaggctgggttcagcagggccacctcaccacgg
ccctccatggactatgacgacgaagagacggactcagacgaggacatcagagagacttac
ggatatgacgtcaaggattcgggagaggtgaagccgtacttgttctgtgacgaggagatt
cctgtgaagtcggaggaggtggtcagtcacatgtggcccacgacgccctctttctgcgct
gagcacgcttactcctctgcctccaagtcctgtcctcagaatcagtccgccccacgcaag
cagccccggaagacgccgctggtgccgcgcagcctggagcctccggtgctggagctctcg
ccggcggccaaggcccagctggaggagctgatgatggagggcgacctgctggaggtgtct
ctggacgagacgcagcacatctggaggatcctgcaggccacgcacccgccctcggaagac
aagttcctgcaggtgatggagcctgaggactcgctgctggacaaacccctcaagatgaag
gtgaaggacgcggagaagaagaggaagaggaagctggagagagcggagcagcagctgctt
ctggcggccggcggcgtggagggacgatccaagtccaaagacatgaagcgggttctggag
ctcaagcccaagaagaagaagctgaagctgagcccggacaagtcccgcgagctgaagcag
ctggccaagcggctggctaaagaggagaaggagcgcaagaggaaggagaaggcggcgacc
aaggcggagtttcccaaggaggggctggagaagaagagccggaagattctggacattccc
tccaagtacgactggtccggagcggaggactccaacgacgagaacgccgtttgtgccgcc
aagaactgccagcgcccctgcaaagataaggtggattgggtccagtgtgacggcggatgt
gacgagtggtttcatcaggtgtgtgtgggcgttacctgcgagatggccgagaacgaagac
tatatctgcttggcctgctcgcggaaagcggcggccgttaaagtgggagcggagactgtg
gtgatgtcctcgccggtgtgtggcggcccgatcgtcccaccgctgccccagaaccagcct
caggagggcagttaa

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