Garra rufa (doctor fish): 141334278
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Entry
141334278 CDS
T11039
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141334278 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141334278 (smarca2)
03036 Chromosome and associated proteins [BR:
grf03036
]
141334278 (smarca2)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141334278 (smarca2)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
141334278 (smarca2)
Chromatin remodeling factors
BAF complex
141334278 (smarca2)
PBAF complex
141334278 (smarca2)
GBAF(ncBAF) complex
141334278 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
141334278
NCBI-ProteinID:
XP_073695424
LinkDB
All DBs
Position
5:13998697..14060281
Genome browser
AA seq
1581 aa
AA seq
DB search
MSTPNEPPVGMSHAGPSPGAGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVPHALQG
QGAGDYSQDMHPLHKPMEGMHEKGMGDDMHYGQMKGVGMRSLHSGMGPPQSPMDQHSQGY
MSPHPSPMGQVSEHVPSPLSGGGPTPPQMSQGQSPMMPMDPQGMGQQARGQSAFSPVQLQ
QLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQPMNTGPFNRPPGMPMPHGGPAT
GPCPSPAMQTHTQSAGPKPWPEGQGSEAPSTPQKLSVPAPSGRPSPAPPLAPTGTQPVPS
TSLTSQPQPQPPPGPGPGQPSLIIQLQQKQNRITPIQKPQGLDPVELLQEREYRLQARIA
HRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRLDVVACMRRDTTLETALNSKAY
KRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSISGKIQK
LSKAIATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDE
YVANLTELVYEHKAAQAAKDKKKKRKKKKKEAGDAEGMGAIGPDGELIDENSQMSELPVK
VIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDDEEVVSRAES
EEKKAIDPNSDEVSETAAKHIIESAKQDVDDEYSVPAGETSSQSYYGVAHAVIERVEKQS
TLLINGSLKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPY
LIIVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSFVPQLRSGKFNVLITTYEYIIKD
KHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLN
FLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVES
QLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKIC
NHPYMFQHIEESFAEHLGYPNGIISGHDLYRASGKFELLDRILPKLKATNHRVLLFCQMT
CLMTIMEDYFAYRNFLYLRLDGTTKSEDRAALLKKFNEEGSQYFIFLLSTRAGGLGLNLQ
AADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQ
KVIQAGMFDQKSSSHERRAFLQAILEHEEQNMEEDEVPDDETLNQMIARNEDEFELFMRM
DLDRRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCEEEEDKIFGRGSRHRRDVDY
SDALTEKQWLRAIEDGNLEEIEEEIRLKRRKRKRHVDKDLRREDADKAKKRRGRPPAEKL
SPNPPKLTKQMNAIVDTVINYRDASGRQLSEVFVQLPSRKELPEYYELIRKPVDFKKIKE
RVRNHKYRSVSDLEKDVMLLCHNAQTYNLEGSQIYEDSIVLQSVFKSARQKIAREESDDD
SNDDDDDEEESEEESKSVKVKIKLSKRDERSQDKGKKRPSRGKAKPVVSDDDSEEDQEDN
FKRTTSSLKGATATMSEEEMS
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcccaatgagccaccggttgggatgtcccatgctggtccatcaccaggtgct
ggcctgtctccagggcccatcctagggcccagccctggacctggaccctctcctggctct
gtacacagcatgatgggtcctagcccagggcccccaagtgtgccgcatgctcttcagggg
caaggggctggagactattcacaggacatgcacccattgcataagcctatggagggaatg
catgagaaggggatgggagacgatatgcactatggccagatgaaaggggtgggcatgaga
tccctgcacagtggcatgggtcctccacagagccctatggatcaacacagtcaaggctac
atgtctcctcatccctcaccaatgggccaggtgtctgagcatgtgcccagccctttgtca
ggaggagggccgaccccaccgcaaatgtctcagggtcagtcacccatgatgcccatggat
ccgcaggggatgggacagcaggccaggggtcagtctgccttcagcccagtccagctacag
caactcagggctcagatcctggcgtacaagatcctgggccgtggtcagcctctgcctgag
aatctgcagttagctgtgcagggcaagaggagcctccccaccatgcagcagcagcccatg
aacactggccccttcaacagacctccaggtatgccaatgcctcatggagggcctgcaacg
ggcccgtgtccctctccagccatgcagactcatacccagagtgctgggccaaaaccgtgg
cctgaaggtcaaggctcagaggcgcccagcactccgcagaagctgtcagtcccggctccc
agcggcagaccctctccagctcccccactggcccccactggcacacaacctgtgcccagc
acctccctcacctcccaaccccaacctcagccaccgccaggaccaggaccaggccagccc
tccctcatcatccagcttcagcaaaaacagaatcggatcacaccgattcagaagcctcag
ggtctggaccctgttgaactcttgcaagagagggaataccgtcttcaggccaggattgct
cacagaattcaggagctggaaaatctgccaggatcgctgccacctgatctgcggactaaa
gctactgtggagctaaaggccttaagactgcttaactttcagcgacagctgaggctcgat
gttgtagcctgtatgcgccgagacacaactctggagacggcccttaactccaaagcctac
aagcgcagcaaaagacagacactgagagaagctcgcatgacagagaaactagagaagcag
cagaagatcgagcaggagaggaagcgccggcagaaacaccaggaatatctcaacagcatt
ctgcagcatgcaaaagatttcaaggaatatcacagatccatctctggaaaaatccagaag
ctgtctaaagccatcgcaacatggcacaccaacacagaaagagagcagaagaaggagaca
gaaagaatcgagaaagagaggatgaggagactgatggctgaggatgaagagggttacagg
aagctaattgatcagaagaaggacaagcgtctggcctaccttcttcaacagacagatgaa
tacgtggccaacctgactgagcttgtctatgagcacaaggctgctcaagctgctaaggac
aagaagaaaaagagaaagaagaaaaagaaggaagctggtgatgctgaaggaatgggagcc
atcggtcctgatggagagctcatagatgagaacagccagatgagtgagctgccagtcaaa
gtcattcagacagagacggggaaagtgctacaggggacggatgcccccaagtccagtcag
ttagaggcctggctcgagatgaaccctggctatgaagttgctccacggtcagacagtgaa
gagagtggctcggaatttgaagaggaggatgatgaagaggtggtctccagagctgaatcg
gaagaaaagaaagccatcgatcccaacagtgatgaagtatccgaaacggcagccaagcac
atcatagagtctgctaagcaggatgtggatgatgagtacagtgttccagcaggagagacc
agctcccagtcttactatggagtggctcacgcggtcatagagagggtggagaaacagtcc
accctgctgatcaatgggtccctgaaacattaccaggtccagggtctggaatggatggtg
tctctgtacaacaacaacctgaatggtattctggctgatgagatgggtttggggaagacc
attcagactatcgcacttatcacttatctgatggaacacaagaggctcaacgggccatac
ctcatcattgtaccgctctcgactttgtccaactgggtttatgagcttgacaagtgggca
ccaagcattgtgaaaattgcctacaagggcacaccatcaatgcggaggtcttttgtgcca
cagctccgcagtgggaagtttaatgtccttataaccacctacgagtacatcatcaaagac
aagcacattctcgccaagattcgctggaagtatatgatagtggatgagggccatcgcatg
aagaaccatcactgcaagctcacacaggtgttgaacactcactatgttgctcccaggagg
ctgttactgactggaacacctctgcagaacaaattgcctgagctctgggccctgctcaac
tttctgttgcccaccatcttcaaaagctgcagcacctttgagcagtggttcaatgctcct
tttgcaatgacaggagagagggtggatctaaatgaagaggagaccatccttatcattcgt
cgtttgcataaggtgttgcgtcccttccttctgcgaagactgaagaaagaggtggagtct
cagttacctgagaaggtggagtatgtcatcaaatgtgacatgtcagccatccagaaggtt
ctgtacagacacatgcagggcaaaggcatcctgctcactgatggctcagagaaagacaag
aagggtaaaggaggagccaagaccttaatgaacaccataatgcagctgaagaagatctgt
aaccatccctatatgtttcagcacattgaggaatcctttgctgagcacttgggatatcca
aatggcattatcagcggacacgacctgtaccgcgcctctggcaagtttgaattactggac
cgcatcctgcccaagctgaaggccaccaatcacagagtgcttctgttctgtcagatgacc
tgcctcatgaccatcatggaggattattttgcttaccgtaactttctctatctgcgtctg
gatggaactacgaagtctgaggatcgtgcagcgcttttaaagaaattcaatgaggaaggc
tcacagtatttcatcttcctgctgagcaccagggcaggaggtctgggcctcaacttgcaa
gctgcagacaccgttgtgatctttgacagcgactggaacccccaccaggacttgcaggcg
caggaccgagcccatcgtattggccagcagaatgaagttcgcgtactgcgtctgtgcacc
gttaatagtgtggaggagaagattctagcagcggccaagtataaactgaacgttgatcag
aaggtcattcaggcaggcatgttcgatcagaagtcctccagccatgagcgcagagccttc
ctgcaggctattctggagcatgaggaacagaacatggaggaagatgaagttccagatgat
gaaactctcaatcaaatgattgctcgtaatgaggacgaatttgagcttttcatgcgcatg
gatttggaccgccgtcgggaggatgcacgcaaccctaagcgtaaacctcgactaatggaa
gaggatgagctgccatcatggatcctgaaggatgatgcagaggtggagcggcttacctgc
gaggaggaggaggacaagattttcggccgtggatcccgtcaccgcagagatgtcgactac
agcgacgcattgacagagaagcagtggctgagggctatagaagatggcaacctggaggaa
atcgaggaggaaatacggctgaagaggcgcaagcgtaagagacacgtggacaaagacttg
agacgtgaggatgcagacaaggccaagaaaagaagagggcgtcctccagcagaaaagctc
tccccaaatccacccaaactcacaaagcagatgaatgctattgttgatacagtcatcaat
tacagagatgcatcaggccgtcagctcagcgaggtctttgtgcagctgccctccaggaaa
gagctccctgaatactatgaactgataaggaagccagtggacttcaaaaagatcaaggag
cgtgtgcgcaaccacaagtacaggagtgtgagcgatctggagaaagacgtcatgcttctt
tgtcacaacgctcagacttataatctagagggctctcagatctatgaggactccattgtt
ctccagtcagtattcaagagtgcaagacaaaagattgctagggaggagagtgacgatgac
agcaatgatgatgatgatgatgaggaggaatcagaggaagagtctaaatcagtgaaggtg
aaaattaagctgagcaaacgggacgagagatctcaggacaaaggcaagaagagaccgagt
cgtggaaaggccaaacctgtggtcagcgacgacgacagcgaggaagatcaggaggacaac
ttcaagaggacaacgagcagtctgaagggagccacagcgacgatgagtgaggaggagatg
agctga
DBGET
integrated database retrieval system
