Garra rufa (doctor fish): 141334392
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Entry
141334392 CDS
T11039
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
grf Garra rufa (doctor fish)
Pathway
grf04137
Mitophagy - animal
grf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
141334392 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
141334392 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141334392 (vcp)
03009 Ribosome biogenesis [BR:
grf03009
]
141334392 (vcp)
04131 Membrane trafficking [BR:
grf04131
]
141334392 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141334392 (vcp)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
141334392 (vcp)
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
141334392 (vcp)
Membrane trafficking [BR:
grf04131
]
SNARE
SNARE associated proteins
Others
141334392 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
141334392 (vcp)
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
141334392 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
141334392
NCBI-ProteinID:
XP_073695555
LinkDB
All DBs
Position
5:12027160..12039593
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKNRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNITWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKAN
LRKSPISKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSNQGG
SGPSQGSSSGGGGAIFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggtggagaatccaaaaatgatgatctttccactgccattctgaagcagaag
aacaggccaaataggttgattgttgatgaatccatcaatgaagacaacagcgtggtgtct
ctctctcaggcaaagatggatgagctccagctctttaggggagacacagttctgttgaag
ggcaagaagaggagggagactgtttgcatcgtcctatctgatgacacctgctctgatgaa
aaagttcgcatgaacagggtggtccgcaacaacctcagggtgcgccttggagatgtcatt
agtattcagccatgtccagatgtgaagtatggaaagcgcatacacgttctgccaatcgat
gacacagtggagggcatcactggcaacctgttcgaggtctatcttaagccttacttcttg
gaggcttaccgaccaatccgtaaaggtgatattttcctggtcagaggaggtatgcgtgct
gtggagttcaaagtggtggagactgaccccagcccgtactgtattgtggccccagacaca
gtgatccactgtgagggtgaacccatcaagagagaggatgaggaagagtctctgaatgag
gtgggttatgatgacattggaggggtaaggaaacagcttgcccaaatcaaagaaatggtg
gagctgcctctgagacacccagctctcttcaaggcaattggagtgaagcctccccgtggc
attctgctgtatggaccccctggaactggaaagactctcatcgctcgtgctgtggcaaat
gaaactggagcattcttcttcctcatcaatggccctgagatcatgagtaaactggcaggt
gaatctgaaagcaatttgcgcaaggcttttgaggaagcagagaagaacgcaccagccatc
atctttattgatgagctcgatgctattgcaccaaaaagagagaagactcatggtgaggtg
gagaggcgcattgtgtctcagctgctcactctgatggacggactgaagcagagggctcat
gtcattgtcatggcagccactaacagacccaacagcattgacccagctctcaggcgattt
ggccgctttgacagagaagtggacattggcattccagacgctactggaagacttgagata
cttcagatccacaccaagaacatgaagcttgcagatgatgttgatctggagcaggtggca
aatgagacccacggccatgtgggtgctgatctggccgccctctgctcagaggctgccctg
caagccatcagaaagaaaatggacctgattgatctggaggatgagaccatcgacgcagag
gttatgaactccctggctgtaacaatggatgacttcaggtgggccctcagccagagcaac
ccatctgccctgagagagacagttgtggaggtgcccaacatcacctgggaggatattggt
ggccttgatgatgtcaagagagagttgcaggagctggtgcagtacccagtggaacatcca
gacaaattccttaagtttggcatgaccccatccaagggtgtgctgttctatggaccacca
ggttgtggtaaaaccctgctggccaaggccattgccaatgagtgccaggccaacttcatc
tcaattaagggcccagagctgctcaccatgtggtttggagaatcagaggctaatgtccgt
gagatctttgacaaggctcgtcaagctgctccttgtgtgctgttctttgatgagttggac
tccattgctaaggctcgtggtggaaacgttggtgatggtggcggtgctgctgacagagtc
attaaccagattctcacagaaatggacggtatgtccagcaagaagaacgtcttcatcatt
ggggccaccaacagaccagacatcattgaccctgccatcctcaggcctggccgactggac
cagcttatctacatcccactgcctgatgagaagtctcgcattgccattctcaaagctaac
ctcaggaagtctccaatctcaaaggacgtggacgtggacttcttggccaagatgaccaat
ggcttttcaggtgccgacttgactgagatctgtcagagagcctgtaaactggcaatccgc
gagtccattgagaatgagatcagacgggaacgtgagaggcagaccaatccttctgcaatg
gaggtggaggaggatgacccagtgcctgagattagaaaggaccatttcgaggaagccatg
cgctttgcccgccgatccgtcagcgataacgacatccgcaaatacgagatgttcgcacag
accctgcaacaaagcagaggctttggcagtttcagattcccatccagtaaccaaggagga
agtggaccaagtcagggctcttcgagtggtggcggaggtgccatcttcaatgaggacaac
gatgatgatctttatggataa
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