Garra rufa (doctor fish): 141334593
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Entry
141334593 CDS
T11039
Symbol
ubb
Name
(RefSeq) polyubiquitin-C
KO
K08770
ubiquitin C
Organism
grf Garra rufa (doctor fish)
Pathway
grf03320
PPAR signaling pathway
grf04120
Ubiquitin mediated proteolysis
grf04137
Mitophagy - animal
grf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
141334593 (ubb)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141334593 (ubb)
04137 Mitophagy - animal
141334593 (ubb)
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
141334593 (ubb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141334593 (ubb)
Ubiquitin system [BR:
grf04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
141334593 (ubb)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Rad60-SLD
Ubiquitin_2
DUF2604
Rad60-SLD_2
TBK1_ULD
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
141334593
NCBI-ProteinID:
XP_073695822
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All DBs
Position
5:12407006..12410420
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AA seq
687 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE
NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL
TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGSEI
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgcagatctttgtaaaaaccctcaccggtaagaccatcacccttgaggtcgagccaagc
gatactattgagaatgtgaaggccaagatccaggacaaggaaggcattccccctgaccag
cagaggttgatctttgccggcaaacagctagaagatggccgcacactgtctgactacaac
attcagaaagagtccaccttgcatctggtgctgcgtctcaggggaggcatgcaaatcttc
gtcaagaccttgacaggcaagaccatcacccttgaggttgagccaagtgacaccattgag
aacgtcaaggcaaaaatccaggacaaagaaggcattccccctgaccagcagaggttgatc
tttgccggcaaacagctagaagatggtcgtaccctgtctgactacaacatccagaaagag
tccaccttgcatctggtgctgcgtctcaggggaggcatgcaaatcttcgtcaagaccttg
acaggcaagaccatcacccttgaggttgagccaagtgacaccattgagaacgtcaaggca
aaaatccaggacaaagaaggcattccccctgaccagcagaggctgatctttgccggcaaa
cagttagaagatggtcgtaccctgtccgactacaatattcagaaagagtccaccttgcat
ctggtgctgcgtcttaggggaggcatgcaaatcttcgtcaagaccttgacaggcaagacc
atcacccttgaggttgagccaagcgacacaattgaaaacgtgaaggccaagatccaggac
aaagaaggcattccccctgaccagcagaggttgatctttgctggcaaacagctggaagat
ggccgcacactctctgactacaacatccagaaggagtccaccttgcatctggtgctgcgt
ctcaggggaggcatgcaaatcttcgtcaagaccttgacaggcaagaccatcacccttgag
gttgagccaagtgacaccattgagaacgtcaaggcaaaaatccaggacaaagaaggcatt
ccccctgaccagcagaggctgatctttgccggcaaacagttagaagatggtcgtaccctg
tccgactacaatattcagaaagagtccaccttgcatctggtgctgcgtctcaggggaggc
atgcaaatcttcgtcaagaccttgacaggcaagaccatcacccttgaggttgagccaagt
gacaccattgagaacgtgaaggccaagatccaggacaaagaaggcattccccctgaccag
cagaggttgatctttgccggcaaacagctagaagatggtcgtaccctgtctgactacaac
atccagaaagagtccaccttgcatctggtgctgcgtctcaggggaggcatgcaaatcttc
gtcaagaccttgacaggcaagaccatcacccttgaggttgagccaagtgacaccattgag
aacgtcaaggcaaaaatccaggacaaagaaggcattccccctgaccagcagaggctgatc
tttgccggcaaacagttagaagatggtcgtaccctgtccgactacaatattcagaaagag
tccaccttgcatctggtgctgcgtcttaggggaggcatgcagatcttcgtcaagaccttg
acaggcaagaccatcacccttgaggttgagccaagcgacacaattgaaaacgtgaaggcc
aagatccaggacaaagaaggcattccccctgaccagcagaggttgatctttgccggcaaa
cagctagaagatggtcgtaccctgtctgactacaacatccagaaagagtccaccttgcat
ctggtgctgcgtctcaggggaggcatgcaaatcttcgtcaagaccttgacaggcaagacc
atcacccttgaggttgagccaagcgacacaattgaaaacgtgaaggccaagatccaggac
aaagaaggcattccccctgaccagcagaggttgatctttgctggcaaacagctggaagat
ggccgcacactctctgactacaacatccagaaagagtccaccttgcatctggtgctgcgt
ctcagaggaggttcagaaatttaa
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