Garra rufa (doctor fish): 141334679
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Entry
141334679 CDS
T11039
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
grf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141334679 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
141334679 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141334679 (sympk)
03019 Messenger RNA biogenesis [BR:
grf03019
]
141334679 (sympk)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141334679 (sympk)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
141334679 (sympk)
U7-dependent histone pre-mRNA processing factors
141334679 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
GNC1_N
Cohesin_HEAT
Rep_Org_C
Motif
Other DBs
NCBI-GeneID:
141334679
NCBI-ProteinID:
XP_073695977
LinkDB
All DBs
Position
5:18166169..18188344
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AA seq
1245 aa
AA seq
DB search
MASGMGEQAHGHDTAIDMTTSEKVVELLNQAALISTEEKLIVLKQVQELIINKDPSLLDN
FLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDESVNVVKKAILT
LTQLYKVALQWLVRTKSVSDMQEACWDMVTQMKEDVLALLDSDNDGVRTHAIKFTETLII
TLSPRTPDSDTPKKQEGDISLDKIPKDHSYIRYDTLCEEGKSALEQLLKFMVHPAISSIN
LTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVSVLKHP
SSVDFQGQISTLLLDLGMSQSEITRCTPAIVQPRKRLHHEPYVEGKRIKMEAPLVEDDED
KEEPAPVVTPKPSSSVGTQSAIDLTAEFLLPLLNSENVANLVLISMVYLPEVMPASFQAT
YTPVESAGTDAQIKHLARLMATQMTSAGLGPGLELCKARDEEVKEEDGGAGESSSKDPLI
IRKLSAVSLGQAISVVGAPVAFKSPVTEEAPQIKKLPEPILPTTQPKAPGASGRKKVFKL
ADVVQPFSEDQIAKLTNMAIRRILQSEKAIAQSGMSHVRVKLLARLVTQFEGGKKNDLLH
FILEDMRGRSELAFSLLYHEYNEYLSQQPSGSLDSYEQCLFTLLSGLQEKPEQRDGLFTK
LVLEAPIITDSALEVIQRYCEDESRVYLGMSTLKELILKRPSRQYQYLNVLLNLSSHEKE
KVRSTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLFGAGEDTEVASPWTEET
VRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMSSPDLLLLVE
NCPKGAETLVTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKNEVIQA
LPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLIALHNIDSSKCDMKSIIKAT
NLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGFVMNILARLILK
QVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQLASVFERCPEMREPLLQHVHSFTPHQ
QAHIPTSIMTVLEANTRKPEPEPQPEIHHPEIIEEREVPVPRHISMPAPVSQPEPPAPTP
VVFAEPLPPPPLQQQQQQQIPPRREEVEEPMEQEETDHAAVKITPEPPSQQMEVPEEAPQ
SNSISEKPDEPMEESAAMPADVAEADQPKEESEDVVPEAGESSVD
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaggcatgggagaacaagcacatggccatgacacagccattgacatgaccacc
agcgagaaggtggtggaattgctaaaccaggcggccctcatctctacagaggaaaagctt
attgttctcaaacaggtacaggagttgattatcaacaaggacccttcactgctcgataat
tttctggatgaaatcatcgcatttcagactgacaaatcaattgaggtgcgaaagtttgtc
atcggattcattgaggaggcatgtaaaagagacaatgagcttctgctgaggctaattgcc
aacctgaacatgctgatgagagatgagagtgtgaatgtggtgaaaaaggccattctgaca
ctcactcagctttacaaagtggctttacagtggttggtgcgcactaagagtgtctcagac
atgcaggaggcatgctgggatatggtgacccagatgaaggaggatgttctggcgttgctg
gattctgataatgacggagttcgcactcacgccatcaaattcacagagaccctcattatt
actctctcaccacgaacacctgactctgacacgccaaagaaacaggagggagacatcagt
ctggacaaaatccccaaagaccactcatacattcgatatgataccttatgtgaggagggt
aagtcggctctggagcagttgttaaagttcatggtgcatcctgccatctccagcattaat
cttaccactgcactgggatcactggccacactggctagacagcggcccatgttcatgtct
gaggtggtgcaggcctatgagacgctacatgctaacctgcccccgactctggctaagtct
caagtgagcagtgtgcgtaagaacctgaagctgcacctggtgtcagtgctaaagcacccc
agcagtgtggactttcagggccagatttccaccctgctgctggaccttggcatgtctcag
agcgagatcacccgttgcacgccagccatcgtacagccccgtaagagacttcaccatgag
ccctatgtcgagggcaagaggatcaagatggaggcccctctagtggaggatgatgaggat
aaggaggaaccagctccagtcgtcacaccaaaaccatcctcctctgttggcacccaatca
gccattgatctcacagctgagttcctgttgcctctgctgaactcagaaaatgtggccaac
ctggtgctcatcagtatggtttacctgcctgaagtgatgcctgcctctttccaagccaca
tacacacctgtagaatcggccggtactgatgcacagatcaaacatttggccaggctgatg
gccacacagatgacttcagctggactgggaccagggctggagttgtgtaaggctcgagat
gaagaggtaaaggaggaagatggaggagcgggtgagtccagctctaaagaccctctcatc
atccgcaagctctctgctgtgtcccttggtcaagccatttcagtggtgggggcgccagtg
gccttcaagagccctgtcaccgaagaagcacctcagatcaagaagcttccagagcccata
ctgcccaccacacagcccaaagctcctggggccagtggcagaaaaaaagtgttcaaattg
gctgacgtggtgcagccgttttcagaggatcagatcgctaaactcaccaacatggccatc
aggcggatcctccaatcagaaaaggccattgcacagagtgggatgtcccacgtccgtgtg
aagctgcttgcacggttggtgacccagtttgagggtgggaagaaaaatgacttgttgcat
tttatcttggaggatatgcggggcagaagtgagctggccttttctttgctgtaccatgag
tataatgaatacctgagtcagcagccctccggctctctggacagctatgagcaatgtctg
ttcacactgctgtccggcctgcaggagaaacctgaacagagagatgggcttttcaccaag
cttgtgttggaagctcctatcattacagactcggcgctggaggtgattcaacgctactgt
gaggacgagtcacgtgtttatctggggatgtcaacattaaaggagctcatcctcaaacgc
ccctccagacagtaccagtacctcaatgtccttctcaacctcagctctcatgaaaaagaa
aaggtgcggtccactgctctcagcttcatcaaacgcatgtatgagaaggaacatctaaag
gactgtattgagaaattcgctctcacctacatgcagtttctggtccacccaaacccacct
tctcttctgtttggagcaggagaggatacagaggtggcgtctccttggacggaggagacg
gtgcggcagtgcctttacctttatctgtccctcctgcccctcaaccatcgtttggtgcac
gagctggctgctgtctacaccgaggccattgccgacatcaaacgcagtgtgctcagggtc
atcgaacagcctataagaggaatgggaatgagctctcctgacctgctgcttctggtggag
aactgtcccaaaggagcagagacactggtcactcgctgtctgcacattctcactgataaa
gtcccgccatctcctgagttggtagagagggtgagggatctttatcataagcgagtgcca
gatgttcgttttcttatcccagtcatcaatggcctggagaagaacgaggtgatccaggct
ttacccaaactcatcaaactcaatcccatcgtggtgaaggaggtgttcaacagactgctg
ggcactcaacacagtgagggcagttcctccatgtctccactaactcctggagagctcctc
atcgccttacacaacattgactcctccaagtgtgatatgaagtcaatcattaaagccact
aacttgtgttttggggagaagaacgtgtacacgtctgaggttctggctgtagtgatgcag
cagttgatggagcagacccctctgcccatactgctgatgcgtacggtcatccagtccctc
actatgtaccctcgtctggctggtttcgtcatgaacatccttgcccgactcatccttaaa
caggtgtggaagtatcctaaagtgtgggagggctttgtaaagtgctgccagcgcaccaaa
ccccagtcctacaatgttctcctccagctgcctccaccacaactggctagtgtgtttgag
cggtgcccggagatgagagagcccctactacagcacgttcactccttcacccctcaccaa
caagcccacattccaacatctataatgaccgttctggaggccaacaccaggaagccagaa
ccagaaccacaaccggaaattcatcatccagaaataatagaagagagagaggtgccagta
ccaaggcatatatcaatgcctgcaccagtatcacaaccagaacctccagcccctacacct
gtagtgtttgctgaaccactaccaccaccaccactacaacaacaacaacaacaacagatc
ccacccaggagggaagaagtagaagaacccatggagcaggaagagacagaccatgctgct
gtgaaaatcacgcctgaacctccatcgcagcagatggaggtgcctgaggaggcaccacag
tccaactccatttcagagaagccagacgaacccatggaagagtcagctgcgatgcctgcg
gatgtggctgaggctgaccaacccaaagaggagtctgaagatgtggttccagaagcagga
gaaagcagtgtggactga
DBGET
integrated database retrieval system
