Garra rufa (doctor fish): 141334698
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Entry
141334698 CDS
T11039
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
grf Garra rufa (doctor fish)
Pathway
grf04010
MAPK signaling pathway
grf04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
141334698 (cacna1ba)
04020 Calcium signaling pathway
141334698 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
grf04040
]
141334698 (cacna1ba)
Ion channels [BR:
grf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
141334698 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
141334698
NCBI-ProteinID:
XP_073696006
LinkDB
All DBs
Position
5:35305152..35515704
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AA seq
2355 aa
AA seq
DB search
MARFEDDLPTRYGGGGSPAGPGRGASRQPGPPGGQRMYKQTMAQRARTMAIYNPIPVKQN
CLTVNRSLFIFSEDNIIRKYAKKITEWPPFEYMILATIIANCIVLGLEQHLPALDKTPMS
KRLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILTIVGPDFD
LRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMG
KFHRTCFRNDTGEQAADYPCGMEAPARTCEGDTVCREYWTGPNFGITNFDNILFAVLTVF
QCITMEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEK
RQEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKVDNAWYKRKCNNPVLKRA
KKSKNDLINAEEGEDHFTDISSVAPQGSPFTRTSVKSNKNESSSYFRRKEKRFRFFIRRM
VKAQSFYWTVLCIVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLIEMSLKMYGLGP
RTYFHSSFNCFDFGVIVGSIFEVIWAAVKPGASFGISVLRALRLLRIFKVTKYWNSLRNL
VVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQ
ILTGEDWNAVMYHGIESQGGVHRGMFCSVYFIVLTLFGNYTLLNVFLAIAVDNLANAQEL
TKDEEEQEEAISKKLALQKAKEVKEVSPMSAANISITASYVCSPAHHFLSKEQQRSLKMM
SVWEQRTTQIRKHMLASSEALYQEELNPRLTSNPHLRPDMKTHLDRPLVVEPRCDGPISP
HRGWDKPQDLQGEGGTPEERVPPVMEPTHSHPPRKHHRHRERPSNETNENGDTGHGKEGR
HHVHHSRSKEHDGTRCKEGKSDRSRSREGGRRHHHQSSVDEGVGGGEREHRHHHSHRHNR
EGNGVVSAGGKSERRSRQKDGSRSGTREGERCSRGENGGNGGRRRHRPRSSKAQSTLEGE
EQRANGEQEEDKSHSHRHMDMGGDSLAVNPNQPSVGNRWCLEKPEDSDNKQNIGQTGGMG
THIPVTVTSPPGETTLIPMNSIDSETMPMTEKNLEDLNQSSPRPILPFSSMFIFTPNNPV
RRLCHYIVSLRYFEMCILVVIAMSSIALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMV
IKMVDLGLLLHPGSYFRDLWNILDFIVVSGALVAFAFSSFMGRSHQSVNRGTKGKDISTI
KSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGK
FFYCTDESKGLEKDCRGLFLDYDKDEVAAQPREWRKYEFQYDNVLWAFLTLFTVSTGEGW
PTVLKHSVDATFEDQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAL
SECSLEKNERACIDFAINAKPLTRYMPQNQYSFQYRLWKFVVSPPFEYSIMIMIALNTVV
LMMKFHGAPDSYEAMLKYLNIVFTALFSMECILKIIAFGPLNYLKDAWNVFDFVTVLGSI
TDILVTEINTTDRLLNLSFLRLFRAARLVKLLRQGYTIRILLWTFVQSFKALPYVCLLIA
MLFFIYAIIGMQVFGNIELNDDTAINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSE
RTCDVSSGIHGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHH
LDEFIRVWAEYDPAACGRIKYLDMYEMLLHMSPPLGLGKQCPPRIAYKRLVKMNMPIADD
NSVHFTSTLMALIRTALEIKLASGMVAQRLSDAELKKELATVWPNLSQKTMDLLVTPHKP
NELTVGKVYAALMIFDYYKQNRAKRLQMQQQQQREQGGPGSQNKVSALLEPILPLTHIQD
QAMNSVDSASEFKAQIRPSSTTLNNGRTHLDNTIKESSSWASEKSKEVQRPKQRTMSRGQ
SEDASNANTAQESVEMMQMENSANTMTSGGLEGQGRAVSMPKLNAEMQRSHSRHSPGTLL
ETIPDSPMRRSASTFASQRPQEVNLNDYTLAKPVQERHHHHHHHHRCHHRRERDKKQRSL
DRSPTGQHKATGTAADPVEERAHDRGRSHERKHHSSSAEKQRYYSCDRYGSREHCPSKSA
MTSCATSPSEAQEASLNKQGSGWAKGSPVLLTSGASTPSRGRRQLPQTPLTPRPSVAYRT
ANSSPVQFLGTQAGLLPPSPGRLSRGLSEHNALLHSGSISSSPAPVSRINSEPFLGPPDH
PAGLQPEAYAVFQEDPSPQTGRSARTVGMPIVAIPPPPQQQFRGVPNGYHFTTGPGASRG
RPRQYYPEAEVDDWC
NT seq
7068 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcttcgaagacgatctcccgacccggtatggaggcggtggctctccagcgggg
ccaggcagaggggccagccggcagccaggccccccgggcggacagaggatgtataagcaa
acaatggcccaaagagcccggacaatggccatatacaacccgataccggtcaaacagaac
tgcctcacagtcaaccgatcccttttcatcttcagcgaagataatatcattcggaaatat
gcaaagaaaataacagaatggcctccatttgagtacatgattctcgccaccattatagca
aactgcattgtactgggcttagagcagcatttaccagctttagacaagacacccatgtca
aagcgactggatgacactgaaccctacttcatcggaatattctgcttcgaggccgggatc
aagatcatcgctctaggctttgcttttcataaaggctcctacctccgcaatggctggaat
gttatggattttgttgttgtgttgacagggattctgaccatagtgggcccagactttgat
ttgcggacactcagggcagtaagagtcttgcggccactcaaactggtgtctggaattcca
agtctccaagtggttctgaagtccatcatgaaagcaatggttcctttgcttcagatcggc
cttctgctcttttttgctatcctcatgtttgccatcattggtctagacttctacatgggc
aagtttcaccgcacctgcttcagaaacgatactggggaacaggcagctgactatccatgt
gggatggaagctccagcccggacatgtgaaggcgacactgtttgtagggaatactggacc
ggtccaaacttcggcataacaaactttgacaacatcctgttcgctgtgctcaccgtcttc
cagtgcatcactatggaaggatgggtggacatcctttacaatgccaacgatgcctcaggg
aacacctggaactggctctacttcatcccactcatcatcatcggctctttcttcatgctc
aacttggttctgggtgtgctgtcaggggaatttgcaaaggagcgagagcgtgtggagaaa
aggcaggagttcctgaagcttcgcagacaacagcagatcgagagggagctgaccggctac
ctagagtggatctgcaaagcagaggaagtaatgcttgctgaagaagataaaaatgcagag
gagaaggtggataatgcctggtacaagaggaaatgcaacaacccagtattaaagagagcc
aagaagagcaaaaatgacctcatcaatgcagaggaaggagaagaccacttcactgacatc
tcatcagtcgctccccagggctctccattcacccgaacaagcgtgaagagcaacaagaac
gagagctcgtcatacttccggagaaaagagaagaggtttcgcttcttcatccgccgtatg
gtgaaggcccagagcttctactggactgttctgtgtatagtgggactgaacacactgtgt
gtggctatagttcactacgaccagcccgaatggctcacatatgcactgtatttggcagag
tttgtgttcctcggtctgtttctaatagagatgagtctgaagatgtatggcctcgggccc
aggacctactttcactcctcatttaactgctttgactttggggtgattgtgggtagcatt
ttcgaagtgatttgggctgcagtgaaaccaggagcctctttcgggattagtgtgttgcga
gcactgcgtttgctgaggatattcaaggttaccaagtattggaactccttacggaatctg
gtggtgtcattgctcaactcaatgaagtccatcatcagtctcctgttcctgctcttcctc
ttcattgtagtgtttgctctgctgggaatgcagctcttcggaggacagtttaattttgaa
gatgagaccccgacaaccaactttgacacattcccagctgctatcctgacagtgtttcag
attctgacaggagaggactggaatgctgtgatgtatcatggaattgaatcccagggagga
gtgcaccggggaatgttctgctctgtgtactttattgtgctcacactgttcggaaactat
actctcctcaatgtctttttggccatcgctgttgataatctcgctaatgcacaagaactt
accaaggatgaggaggagcaggaagaggccatcagtaagaaactggctctgcagaaagcc
aaggaggtaaaggaggtcagccccatgtcggccgctaacatttccatcacagcgagttat
gtctgctcccctgcacatcacttcttgagtaaagaacagcagcggtctctaaagatgatg
tccgtgtgggagcagcgcaccacacagattcggaagcacatgctggccagcagcgaggca
ttgtaccaagaggagctcaacccccggctgacctccaaccctcacctccgcccagacatg
aaaacccacctggaccggcctctggtggtggaacctcgttgtgatggtcccatcagtccc
cacagaggctgggacaaaccccaggatttgcaaggggaaggtggcacaccagaggaacga
gttccccctgtgatggagcccacacactcgcacccacctcgcaagcatcaccgtcatagg
gagcgtccctctaacgagaccaatgaaaacggtgacaccggtcatggtaaagaaggccgg
catcacgtccatcacagccgcagtaaggagcatgatgggacacggtgtaaggaggggaag
agtgaccggagccggagcagagaggggggccgcagacatcaccatcagagctcagtggat
gagggagtgggaggtggggagagagaacatcgtcaccatcactcccacaggcataacagg
gagggtaatggagtggtcagcgctggggggaaaagcgaacgacggtccaggcagaaggat
ggctcacgttcgggaacaagggagggggagaggtgctccaggggtgaaaatggaggtaat
ggagggaggagacggcacaggccacgtagcagtaaagctcagtccacgctggaaggagag
gagcaacgagcgaatggagagcaggaggaggacaagtcacacagccacaggcacatggac
atgggaggagattcactggctgtaaaccccaatcaaccttcagttgggaaccgatggtgt
cttgagaaaccagaagactcggacaataaacaaaatattggtcagaccggaggaatggga
acacacatacctgtgaccgtcacgtctccccctggagagacaactcttattcccatgaac
agcatagacagtgagacgatgcccatgactgagaagaatctggaggatctgaaccagagc
agccctcgtcccatcctccccttcagctccatgttcatcttcaccccaaacaatccggtg
aggcgtctgtgccactatattgtaagtctgcgatactttgagatgtgtatcctggtggtg
atcgcaatgagcagtatagccctggctgcggaggatccagtccaagccaatgcccctcgt
aacaatgtcctgaagtatttggactatgtcttcactggtgttttcacatttgagatggtc
attaagatggtggatttaggtttattgctgcatcctggttcctacttcagagatctgtgg
aacattctggacttcattgtggtcagtggtgcactggtggcattcgcattctcgagcttc
atgggtagatcacatcaaagcgtaaacagaggaaccaagggcaaagacatcagcactatc
aagtccctgagggttctgcgagtcttgcgaccactgaagaccattaaacgtctaccaaaa
ctgaaggcggtgttcgactgtgtggtgaactccctgaagaacgtgttgaatatcctcatt
gtctacatcctgttcatgttcatcttcgctgtcattgctgtgcagctcttcaagggcaag
tttttctactgcacagatgagtccaaaggcctggagaaagactgcagggggctgttcttg
gattatgataaggatgaagtggcggcccagcccagggagtggaggaaatacgagttccaa
tacgacaatgtgctgtgggcgtttctcacgctcttcaccgtttctactggagagggctgg
ccaacggttttgaaacattctgtagatgcaacttttgaggaccagggtcccagtccgggc
taccgcatggagatgtccatcttctacgtggtctactttgtggtcttccccttcttcttc
gtcaacattttcgtggccttgataatcatcacattccaggaacagggtgataaggccttg
tcagagtgcagtctggagaagaatgagagagcctgcatcgactttgctatcaatgccaaa
ccgctgacccgctatatgccacagaaccagtactcctttcagtaccgcttgtggaagttt
gtggtctctccaccatttgagtactccatcatgatcatgattgctctcaacaccgtggtg
cttatgatgaagttccacggggcgcctgactcttatgaagctatgctcaagtatctcaac
atcgttttcactgctctcttttcaatggaatgtattctcaagattattgcttttggcccc
ttgaattacctaaaagacgcctggaatgtgtttgactttgtgactgtgctgggcagcatc
actgacatcttagtcactgagattaacactacggaccgtctgctgaacttgagtttcctg
aggctcttcagagcagccagactcgtcaaactcctccgacaaggatacaccattcgcatc
ctgctctggacattcgtccagtcttttaaggcgctgccttatgtttgcctcctaatcgcc
atgctgtttttcatctacgccatcattggaatgcaggtgtttgggaacatcgagttgaac
gatgataccgccattaatcgtcacaacaactttcgcactttcctccaagcactaatgctg
ttgttcaggagtgccactggtgaagcctggcatgagattatgctgtcctgtctgagtgag
cgcacctgtgatgtgagctcaggcattcatggaaaggagtgcgggagtgactttgcctac
ttctactttgtctccttcattttcctctgttctttcctgatgttgaacctgtttgtggct
gtcattatggacaactttgaatacctgacacgtgactcctccatcttggggcctcaccac
ctggatgagtttatccgagtgtgggcggagtatgacccagccgcatgtggccgtatcaag
tacctcgatatgtatgagatgctgctccacatgtccccacctttaggtttgggaaagcaa
tgccctccacgaatcgcctacaagcggctggtgaaaatgaacatgcccattgcagatgac
aacagtgtgcattttacctctactctgatggctctgatccgcacagccttggagatcaaa
ctagcatcaggcatggtggcccaacgtctgtcagacgctgagctgaagaaagagctcgct
acagtctggccaaacctgtctcagaagactatggacctgctagtcacgccacacaaaccc
aatgagcttacagtgggcaaggtatatgcggctcttatgatttttgactattacaagcaa
aacagagccaaaagacttcagatgcagcaacagcagcagagagaacagggaggacctgga
tctcagaataaagtcagtgctcttttagagcctattctcccattaacccacatccaggat
caggccatgaacagtgtagattcggcctcagagtttaaagctcagatcagacccagctcc
accacgcttaacaacggacgcacacatcttgacaacacaataaaggaatcttcatcctgg
gcctcagagaagtccaaggaggtccagcggcctaaacagcggacaatgtccagaggtcaa
tcagaggatgcctcaaatgcaaacactgcccaggagtcagtagaaatgatgcagatggag
aacagtgccaacacaatgacctctggcggccttgaaggccaaggacgtgcagtatccatg
ccaaagctcaacgccgagatgcagaggagtcattcccgtcattctcctgggactttactg
gaaaccattcccgattcccccatgagacgctccgcgtccacttttgcatcacagcgccct
caggaggtgaatctgaatgactacactttggcgaaacctgttcaagagcgacatcatcac
catcaccatcatcacagatgccatcatcgtagagagagagacaagaaacagagatctctg
gacaggtcgcccactggccaacacaaagctacaggcacagcagctgatcctgtagaggag
agggcccatgaccgaggtcgttcccatgagaggaagcatcattcgtcttcggcggagaag
cagcggtattactcatgcgatcgctatggcagtcgggaacactgtcccagcaagtctgcc
atgacaagctgtgccacctcgcccagcgaggcccaggaggccagtctcaacaagcagggc
agtgggtgggctaaggggagcccggtgttgttgacctcaggggcgagcactccaagccgt
gggcgcagacaactgccccagacccctcttactcctcgtccctccgtggcctacaggact
gccaactcctcccctgtgcaatttctgggcacacaggcaggcttgcttcccccgagtccc
ggcaggctgagccgcggtctgtccgagcacaacgccctcttacacagcggctccatctcc
agctcgccggcccccgtcagtcgcattaactcagaacccttcctggggcccccggaccac
cctgccggcctccagcccgaagcctacgctgtcttccaagaggatccgagccctcagacg
ggccgctctgcccggactgtagggatgccgatcgtggcgattcccccacctccccaacag
cagttccgcggggttcccaacggataccacttcaccacgggccccggcgccagtagagga
cggccacggcagtactacccagaggcagaggtggacgactggtgctag
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