Garra rufa (doctor fish): 141334712
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Entry
141334712 CDS
T11039
Symbol
tncb
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
grf Garra rufa (doctor fish)
Pathway
grf04510
Focal adhesion
grf04512
ECM-receptor interaction
grf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141334712 (tncb)
04518 Integrin signaling
141334712 (tncb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141334712 (tncb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141334712 (tncb)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141334712 (tncb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
EGF_Teneurin
fn3
EGF_Tenascin
EGF_2
Fibrinogen_C
DUF7949
EGF
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
hEGF
fn3_2
Big_5
Motif
Other DBs
NCBI-GeneID:
141334712
NCBI-ProteinID:
XP_073696025
LinkDB
All DBs
Position
5:35968379..36011753
Genome browser
AA seq
1969 aa
AA seq
DB search
MGMRGLLLACVAVAMLVHLSSAGLVKRVIRHRRESLSPTTENLTLPSPDQPVVFNHVYNI
NVPSGSMCSVDLDSPGTAPVKPKSANLQSDQHIEHTTDGENQIVFTHKINIPKQACGCDN
HMPDLKDLLNRLEMLEAEVSSLREQCTSGTGCCGAQVTAGEITTKPYCSGRGNYSTETCS
CVCEPGWKGVNCSEPECPNFCQDQGRCEDGKCVCFEGFGGDDCSIELCPVDCGENGECID
GACLCAEGFSGEDCGLTNCLNNCLGRGRCVEDECVCDEPWTGFDCSELICPNDCYDRGRC
DNGTCYCEEGFTGEDCGELTCPKNCNHHGRCVNGQCVCNIGYSGEDCSKLTCLNDCNERG
HCFNGKCICDPGFEGEDCSILSCPDNCNDRGQCINGECICDEGYEGEDCSELSCPNNCHD
RGRCVNGKCICKTGFAGEDCSIKTCPHDCHGHGECVDGKCVCHDGYGGEHCGIKTCPHHC
HGRGQCVDGKCICLHGFAGEDCSIKTCPSHCHGRGQCVDGKCICHDGFTGDDCSIKTCPN
DCHERGKCVDGKCICHEGFAGEDCSIKTCPNDCHERGQCVDGKCVCHEGFAGEDCSIKTC
PNDCHDRGQCVDGKCVCHEGFAGEDCSIKTCPNDCHERGQCVDGKCVCHEGFAGEDCSIK
TCPNDCHERGQCVDGKCVCHEGFAGEDCSIKTCPNDCHERGQCVDGKCVCHEGFAGEDCS
IKTCPNDCHERGQCVDGKCVCHAGFTGHDCSELTCPSDCHNRGRCVNGQCVCEIGFTGED
CGTKTCPYNCLDRGYCEDGKCVCFEGYTGEDCSVLTCPENCNDQGQCLNGMCICDLGFTG
DDCSEISPPRDLTVTVVDPETVDLAWVNEMLVTEYLITYAPTAPGGLEMEMRVSGEKKTA
TIRELEPGIEYLISVFAVLNSKMSVPVSARISTHLPEPEGLKFKSVRETSVEVEWDPLNV
PFDGWNLIFRNTKEEDGEISNSLTPPETTFEQSGLGPGQEYEVKLEVVKNNTRGPPASRN
VVTMIDAPSQVDVRDVTDSTALITWFQPVAQVDGISMSYGPNADSTDRKTIELSSLDTQY
HLAKLYPDTEYEVSLMARRGEMTSFPVYETFTTDLDAPKHLKAVEETDESITLEWKNSKA
NVLSYRVKYGPLSGGEHGELVFPSGPQDTTQAKITGLRPGTEYGMGVTSIKEERESLPAT
TNAVTDLDAPKDLIVSETMENTLALAWKRPVAKIDTYELVFTSPDGTETKLEVPGAANIY
ILTDLIPGTQYTISLAAKRGRKMSAPATLSASTDEEKPQVGNITISDMSWDSFTVSWELD
RGEVEGFLVEVSDPDGLSDGQNHTLSSQEFSLAITDLSPSTFYRVTLYGLYKGELLDPVF
AEAITEAEPEVEHLSVSDITPHSFKLTWTAPEGIFDTFTLKVSESNGLTQPLHIIVPGNK
RTEEVRLLREDTEYEIEISGIILGRKFQPILAVAQTGLGLPKGIRFSDVTDTSATVHWTL
STNRVDSYRVTYVPVQGGSPITLRVDGGESQAMLPNLTPGVTYQVTVIAVRGLEESEPGS
DRFTTALDKPRGLTAVNITDTEALLLWQPSIATVDGYVITYSADSVAPVMERVSGNTVEF
EMSSLTPATLYTVKIYAVREAAKSAATTTEFTTDVDAPQNLAASNIQTESAMLTWKPPRA
DITGYILSFESADGIVKEVVLSPTATFYSMSQLTSSTEYTVKLQAIAGPKRSRIISTVFT
TIGVLYKHPKDCSQTLLNGETSSGLYTIYLRGDENQPLQVSCDMTTDGGGWIVFVRRQSG
KVEFFRNWKNYTAGFGDLNDEFWLGLSNLHKITSSGQYELRVDLRDKGESAYAQYDKFSI
SEPRSRYKVHVGGYSGTAGDSMTYHHGRPFSTYDNDHDIAVTNCALSYKGAFWYKNCHRV
NIMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIRPSNFRNFEGRRKRS
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atggggatgcgaggcctgctactggcctgtgtggcagtagccatgttagttcatctctct
agtgctggcctggtgaaaagagtaattagacacagaagagaatcgctgtcaccaaccact
gagaacttgaccctcccgagtcctgatcagcctgtggtttttaaccatgtttataacatc
aacgttccttctggatccatgtgctctgtggacttggattcacctggaacagcaccagtg
aagccaaaatcggctaatctgcaatctgaccagcacatagagcacaccacggacggagag
aatcagattgtttttacgcataagattaacattcccaagcaagcttgcggttgtgataac
cacatgcctgacctgaaggatcttctgaacaggctggaaatgctggaggcagaggtatcc
agtctaagagagcagtgcaccagtggaacaggctgctgtggtgctcaggttacagcaggt
gaaatcacaaccaaaccctactgcagtggccgcggcaactacagcaccgagacctgcagc
tgcgtgtgtgagcccggctggaagggagtcaactgctccgagccagaatgcccaaacttt
tgccaggatcaaggccgttgtgaagatggcaagtgtgtctgcttcgagggcttcggcggt
gacgattgcagcattgagctgtgccctgtggactgcggtgagaatggagagtgcatagac
ggggcttgcctctgcgcggaaggcttcagcggtgaggactgcggtttgaccaactgccta
aacaactgcctcggcagagggcgctgtgtggaagacgaatgtgtatgtgacgagccttgg
acgggttttgactgctccgagctcatctgtcccaacgactgctacgaccgtggccgctgt
gacaatggaacctgctattgtgaagagggctttactggggaggactgtggggagcttacc
tgccccaaaaactgtaaccaccatggcaggtgtgtcaatggacagtgcgtctgcaacatt
ggctacagcggagaggattgctccaagcttacttgcctcaatgactgcaatgagagaggt
cactgcttcaatgggaagtgcatatgcgaccctgggttcgagggcgaggactgcagcata
ctttcctgtcctgacaactgcaatgatagggggcagtgcatcaatggtgagtgtatttgt
gatgaaggatatgaaggtgaggactgctctgagctttcttgccccaataactgccacgat
cgtggccgatgcgtcaacgggaagtgcatttgcaaaacaggctttgctggagaagactgc
agcatcaagacttgtccccatgactgccacggacatggagagtgtgtagatggcaaatgc
gtttgccatgatggctatggtggagaacactgtggcatcaagacctgtccccatcactgc
catggacgtggacagtgtgtggacggcaagtgcatttgcctccatggctttgctggagaa
gactgcagcatcaaaacctgtcccagtcactgccatggacgtggacagtgtgtggatggc
aagtgcatttgccacgatggttttactggagatgattgcagcattaaaacttgtcccaat
gactgccatgagcgtggaaaatgtgtagatggcaagtgcatatgccatgaaggttttgct
ggtgaagactgcagcatcaaaacttgtcccaatgactgccatgagcgtggacagtgtgta
gatgggaaatgcgtttgtcatgaaggttttgctggtgaagactgcagcatcaaaacctgt
cccaatgactgtcatgaccgtggacagtgtgtagatggcaagtgtgtttgccatgaaggt
tttgctggagaagactgtagcatcaaaacttgtcccaatgactgccatgagcgtggacag
tgtgtagatgggaaatgcgtttgtcatgaaggttttgctggagaagactgcagcatcaaa
acttgtcccaatgactgccatgagcgtggacagtgtgtagatgggaaatgcgtttgtcat
gaaggttttgctggagaagactgcagcatcaaaacttgtcccaatgactgccatgagcgt
ggacagtgtgtagatgggaaatgcgtttgtcatgaaggttttgctggagaagactgcagc
atcaaaacttgtcccaatgactgccatgagcgtggacagtgtgtggacggcaagtgcgtt
tgccatgctggttttacaggccatgactgcagcgaattgacttgccccagtgattgccat
aaccgaggacgttgtgtaaatggccaatgtgtgtgcgaaatcgggttcactggggaggac
tgtggtacaaagacgtgtccatacaactgtctggaccgtggctactgtgaagatggaaag
tgtgtctgctttgagggctacaccggtgaagactgctctgttctgacctgcccagaaaac
tgcaatgaccaaggccaatgtctgaatggaatgtgcatatgtgacctaggcttcactggc
gacgactgctctgaaatctccccacccagagacctgactgtgactgtggtcgatccagaa
acagtagaccttgcctgggtcaatgaaatgcttgtgacagagtatcttatcacctatgca
cctacggctcctggcggtttggagatggaaatgagagtctctggtgaaaagaagacagcc
actattagagagcttgagcctggcatagagtacctgattagtgtctttgctgtcctgaac
agcaagatgagtgtccctgtcagtgccagaatatccacacatcttcctgaacccgagggt
ctgaaattcaaatcggttagagagacctcagtggaggttgagtgggaccccttgaacgtc
ccttttgatggctggaacctcatcttcagaaacacaaaagaagaggatggagagatttcg
aactctctcacccctcctgagaccacctttgagcagtctggtcttggacctgggcaagag
tatgaagtcaagcttgaggtcgtaaagaacaacacccgtggacccccagccagcaggaac
gttgtcacaatgattgatgctcccagccaggtagatgtgcgtgatgtgacagactctaca
gcccttatcacctggtttcagcctgtcgctcaggtggacgggatctctatgtcttatggc
ccaaacgcagattccacagacaggaaaacaatcgagctttcctccttggatacacagtac
catctggctaagctgtatcctgacacagagtatgaagtctctctcatggcccgaagggga
gaaatgaccagctttccagtgtatgagaccttcactacagacctcgatgcccccaagcac
ctcaaggcagttgaagagacagatgagagcataactctggagtggaaaaacagcaaagcc
aatgtcctcagttaccgcgtcaaatacggcccactttctggaggggagcacggagaactg
gtcttcccaagcggcccgcaagacaccactcaggctaaaatcactggccttcggcccggg
acagagtatggaatgggagtgacatcaatcaaggaagaacgtgagagtttgcctgcgaca
accaatgctgtgactgatcttgatgcccccaaagaccttatagtaagtgagaccatggag
aacacattggcactggcttggaagaggccggttgctaaaatcgacacctatgagctagtg
tttacatctccggatggcacagaaactaaattggaggtacctggtgctgccaacatctac
atcctgactgacctgattcccggcacgcagtacaccatcagcctggctgccaagagagga
agaaagatgagtgcgccagccactctgtcagcatccacagatgaagagaaacctcaggtg
ggcaacatcaccatctctgatatgtcctgggacagcttcactgtgtcctgggagctggac
agaggagaggttgagggctttctagttgaagtgtctgacccagatggcttatctgatggc
cagaaccatacactatccagccaggagttcagcctggctatcactgacctctcccctagt
actttctacagggtcacactgtatgggctctacaagggagagctcttagatcctgtcttt
gctgaagccatcacagaagccgaacccgaagtggagcatctttcagtctcggacatcacc
ccgcacagctttaaactcacatggacagcaccagagggcatctttgatacattcactctc
aaagtcagcgaatctaacggactgacccaacctctccatatcattgtacctggaaacaag
cgaacagaagaagtgagacttctccgtgaagataccgagtatgaaatcgagatctctggg
atcattttgggacggaaattccagcccattttggctgtagctcaaacaggtttggggtta
cccaaggggatacgcttttctgatgtgacagatacgtcggctactgttcactggactttg
tctactaaccgtgtagacagctaccgggtcacctatgtgcctgttcagggtggcagccct
ataacactgagagtagatggaggagagtctcaagctatgctgcctaatctaactcctgga
gtgacctaccaggtcactgtcatcgctgtgaggggcttggaagagagtgaaccaggatct
gatagattcacgacagccctggataagccacgaggtctgacagcagtcaacatcaccgac
actgaagctctgctgctgtggcagccgtccatcgctactgtggacggatatgtcatcact
tacagtgcagacagtgtggctccagtgatggaacgggtgtctgggaacactgtggagttt
gagatgagctccctcacacctgccaccttatacaccgttaaaatctatgctgtcagagag
gcagccaagagcgctgctaccaccacagagttcaccacagatgttgatgcccctcagaat
ctggctgccagtaatattcaaacagagagtgccatgttgacatggaagccaccaagagca
gacataactgggtatatcctcagctttgagtctgctgatggcattgtcaaggaggttgtc
ctcagccccacagcaacattttacagcatgtctcagctgacttcctctacagagtacaca
gttaaactgcaggccatcgctggaccaaagagaagcagaatcatctctacagtcttcacc
accattggagtgctgtacaagcatcctaaagactgctcgcagactttgttaaacggagaa
acatcctcaggcttgtacactatttacctgcgtggagatgagaatcagcctctgcaggtc
tcctgtgatatgaccactgatggaggcggctggattgtatttgtgagacggcagagcggt
aaagtggagtttttcagaaactggaagaactacactgcaggcttcggtgacctgaacgat
gaattctggttgggtctctctaacctccataagatcacctcctctgggcagtatgagctg
cgtgtggacctgagagataagggagagtctgcatatgcacagtatgacaagttttcaatc
tctgaaccacgcagtcgctacaaagtgcatgttggaggatacagtggcactgcaggtgac
tcaatgacatatcatcacggccgtcccttctcaacctacgataatgaccacgatatagct
gtcaccaactgtgctctgtcttataagggagcgttctggtataaaaactgtcatcgagtg
aacataatgggccgatacggagacaacagtcatagcaagggtgtaaactggttccactgg
aagggtcatgagcactccatcgagtttgcagagatgaagatcagaccctccaacttcagg
aatttcgagggacggagaaagcgatcgtaa
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