Garra rufa (doctor fish): 141334882
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Entry
141334882 CDS
T11039
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03030
DNA replication
grf03410
Base excision repair
grf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141334882 (pole)
03410 Base excision repair
141334882 (pole)
03420 Nucleotide excision repair
141334882 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
grf03032
]
141334882 (pole)
03400 DNA repair and recombination proteins [BR:
grf03400
]
141334882 (pole)
Enzymes [BR:
grf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
141334882 (pole)
DNA replication proteins [BR:
grf03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
141334882 (pole)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
141334882 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
zf_DPOE_2
zf-DPOE
DNA_pol_B
Sigma70_ner
PIP5K
Motif
Other DBs
NCBI-GeneID:
141334882
NCBI-ProteinID:
XP_073696209
LinkDB
All DBs
Position
5:complement(48068751..48092427)
Genome browser
AA seq
1842 aa
AA seq
DB search
MRGGRKAGSTLATYSVSDAVATYYLYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEAL
LMVQAFHVNIVFPNKQEQVFNKLTDDGHVLDSETYVGGHVEALESGVFRSDIPCRFKMNP
SAFDFLLQRVERTLRHAIEEEENIPLEQVTNFNEVCDEIKRKLISLKEVPNRIECPLIYH
LDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGANCQRRMTWQWRGEIMPASRSEFH
RIQQQLESEKFPPLFPNGPPRAFHNLNREEQARHEKKRLGDYCRKAYKKVHLTRLEERVT
TICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSTAQDNGDAAEVKRCKNMEILYESL
QLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGANIITQARELIEQIGRPLELDTDGI
WCVLPNTFPENFVIKSTNEKKAKVTISYPGAMLNIMVKEGFTNHQYQELVDPASLTYETR
AENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKI
FQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSKAANMPDAELFELISENRSMSRKLE
DYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVISRKPEGSPVTERAIPLAIFQAEES
VKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGSAIQKIITIPAALQQVKNPVPRVRHP
DWLHKKLLEKNDIYKQKKISELFTSEGKRQVAQQTVAAGETPDMEDFGAPQRPVQPAILI
STKRKRISQGEDSQAESQEQELTQSWREILGPPPAMGATREEILVWLRYHKKKWELQLRQ
RKERRKRRRLVDGESQSTGGGVIRDGPTTGLGSFLRRTARSILDMPWQIVQIAETSHPGL
YKLWAVIGSDLHCMKLNIPRVFYVNQKVPKQEEGANCKKVNRILPRSGVVYFLYQYAVAE
DMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQLGCMCMVNKRVVRDLAGREADTFD
LEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHKALFGLFIPSQRKASIFVLDTVRSNQMP
NLSSLYGAERTALLEKTTEELLPPEKHLFEVRAENDVKAIYRALQRILLNYKEERRGPTL
IAVQSNWELRRLAAGMTVLEEFPVVPVHVIDEISYNVLDWQRHGARRMIKHYLNLDSCLS
QAFDMARYYHLPVGNLPQDISIFGSDLFLARHLRKHNHLLWLSPTARPDLGGKEADDSRL
VMESDERGSMEINSHGCYSTVCVELDIQSLAVNTILQSQHVNDMEGGASIGVSFDVIQHA
SLEEMMSGNQGANAVASYDETALCSNTFRILKSMVVGWVREITQYHNVYADNQVMHFYRW
LRSPSSLLYDPALHRTLLNMMKKIFLQLVAEFKRLGSSVIYGNFNRLILCTKKRRIDDAI
AYVEYITNSIHSKEIFHSLSITFSRCWEFLLWMDPANSGGVKGKLPSSLLYGEHDNEKKK
KKGGEEEDGSEDEDEDEENQGEDEEQDGEDDVEDLIESNWNIMQYLPQTASCQKYFLMII
SAYIAAVYHSMRQELRRNTPGATPIKRRGATQASQQQTGDVSALPGLITFSQEYVSSELT
QNFFTITQKIQKKVSSTRSVTLPSEMFPVLPGSHLPLNNPALEFIKYVCQVLSLDANIVN
QVNKLKRDLLRLVDVGEFSEDSQFRDPCKSYVLPEVICHHCNFCRDLDLCKDPAVSQDGS
VLPQWFCSNCQAQYDTESIEMALVEALQKKLMSYTLQDLECAKCKGVKEANMPLYCKCAG
DFNLSFTTKSFTEQVEVFRNIAAHYNMNFLLETIDWVLSMNA
NT seq
5529 nt
NT seq
+upstream
nt +downstream
nt
atgaggggcgggcgcaaagcaggaagtactctggccacctattcagtgtctgacgctgtg
gccacatactacctttatatgaaatatgttcatcccttcatttttgccctctgcaccata
attcctatggaacccgatgaggttttgcggaaaggctccggtaccctgtgcgaggccttg
ctgatggttcaggccttccatgtcaacattgtcttcccaaacaagcaggagcaggtcttt
aacaaactcacagatgatggtcatgtacttgactctgagacttatgttggtggccacgtc
gaggctctagagtccggcgtgtttcgcagtgatattccctgccgctttaaaatgaatcca
tcagcatttgacttcttgcttcagagggtggagcgtactctccgtcatgcgatcgaggaa
gaggagaatattcctcttgagcaggtcaccaactttaatgaggtgtgtgatgagatcaag
aggaagctgatatctctaaaggaagtgcccaatagaatcgagtgtccacttatttaccat
ctggatgtgggggccatgtaccccaacatcatcctcactaacagactacagccctcagcc
atggtggatgaggcgacctgtgccgcctgtgattttaataaacctggtgcaaactgtcag
cgcaggatgacttggcagtggagaggagaaatcatgccggccagtaggagtgagtttcat
cgcattcagcaacaactggagtcagagaagtttccccctctctttcctaatggtccacct
cgtgctttccataatctcaatagagaagaacaggctcggcatgagaaaaagcggttggga
gactactgtagaaaagcctataagaaggttcacctgaccagactggaggagagagtcact
accatttgccagagagagaactccttttatgttgacacggttcgagccttcagagaccgt
cgatatgagttcaaaggactccacaaggtgtggaagaagaaactgtctacagcacaggat
aatggggacgcagcagaggtgaagcgctgtaagaacatggagattctttatgagtctctg
caactggcgcacaagtgcatcctcaactccttctacggatacgtcatgagaaaaggagca
cgctggtactcgatggagatggcagggattgtctgttataccggtgccaacattatcaca
caggccagagaactcattgagcagatcgggaggcctctggagttggacactgatggtatc
tggtgtgttcttcccaacacctttcctgagaactttgtcataaaatccaccaatgagaag
aaggcaaaggtgaccatcagttatcctggagctatgctgaatatcatggtcaaggagggc
ttcacgaatcatcagtatcaagaactggtggacccagcatcactaacatatgagaccaga
gctgaaaacagcatcttctttgaagttgatgggccatacttggctatgattctgcctgcc
tccaaagaagaaggaaaaaagctaaagaagaggtatgctgtgtttaatgaggatgggtca
ctggctgagctgaagggctttgaggtgaagaggagaggagaacttcaactcattaagatc
ttccagtcttctgtgtttgaggccttcttgaaaggcacaactctagaggaggtttatgcc
tctgtggctaaagtggctgactactggcttgatgtgctctacagcaaggctgctaacatg
ccagatgcagagttgtttgagctgatttcggaaaaccgctccatgtcccgtaaactggaa
gattatggagaacagaagtccacctccattagcacggccaagcgtcttgcagagttcctt
ggcgatcagatggtgaaggatgctggcctcagctgtcgctatgtcatctctcgcaagcct
gagggctcaccagtcactgaaagggcaatccctctggccatttttcaggctgaagaaagt
gttaaaaagcattttctacgcaagtggctaaagatgcccagtctccatgaccttgatatt
agatctattctggactggagttactacattgagcggttgggcagtgccatacagaagatc
atcactatccctgcagctctacagcaggtgaaaaacccagtgccccgagttcgtcatcca
gactggctgcataaaaagcttctggaaaaaaatgacatctacaagcagaagaagatcagt
gagctctttaccagtgaaggaaagagacaggtagctcaacaaactgtagcagcaggtgag
actcctgatatggaggacttcggtgctcctcagcgccccgtgcagcctgccatactcatc
agcacaaagagaaagaggatatctcaaggagaggacagccaggctgagtctcaagagcaa
gagctcacacagtcttggagagaaatactggggccaccaccagctatgggcgccacccgg
gaggaaattcttgtttggttgcgctaccataagaaaaaatgggagctgcagcttcgtcag
agaaaggaacggcggaagcgacgccgtttggttgatggagaatctcagtcgactggaggt
ggtgtaatacgagatggaccgacgacagggctaggcagcttcctgcggagaaccgcccgc
agtattctagacatgccctggcaaattgtacagattgcagagaccagtcacccaggtctt
tataagctgtgggcggtcattggcagtgacctgcactgcatgaaactcaacatcccacga
gtgttttatgtcaatcagaaagtgcccaagcaagaagagggggctaattgcaaaaaggtg
aaccggatacttccacgttctggtgtggtgtattttctgtaccagtatgctgttgctgag
gacatgtaccaggaacacatcaatgagatcaatgctgacctctcagctcctgatattgag
ggtgtctatgagacacaggttccgctgctgttccgggctctggtccagctgggctgcatg
tgtatggtcaataaacgggtagtcagagacctggctggcagagaggctgatacctttgac
ctggagcacctagagatgagatcactggcccagttcagctacctcgagccaggcagtgta
aggcacatctacctgtaccatcacagtcagggtcataaggctctgtttggcctcttcata
ccatcccaacgcaaagccagcatctttgtgcttgacacggtacgcagtaatcagatgccg
aacctgagttcgttgtacggagcagagcgtacagcactcctggaaaagaccacagaggag
ctcctgccacctgagaaacatctatttgaagtgcgtgccgaaaacgacgtcaaagccatc
taccgtgcactgcagcgcattctcctcaactacaaggaggagcggcgcggtccgactcta
atcgctgttcagtctaactgggagctgcgacgcctggcggctggcatgactgtactggag
gagttcccagtggtcccggttcatgttattgatgagataagttacaatgtactggactgg
cagcgccacggagctcgccgaatgataaaacactacctgaacctggacagctgcctctca
caggcttttgatatggccaggtattatcacctgcctgtgggaaatctgcctcaggacatt
tctatatttggatcggatctatttcttgcacgtcatctgagaaagcacaaccacttgttg
tggctgtcacctacggcacgtccggacctcggggggaaagaggctgacgacagcagactg
gtgatggagagtgatgagagaggctccatggagatcaatagccatggctgctactccaca
gtgtgtgtggagttggatattcagagtttggccgtgaacaccattctacagtcccagcat
gttaacgacatggaaggcggagccagcattggcgtcagctttgatgtcattcagcatgca
tctttggaggaaatgatgtcagggaaccagggggcaaatgcagtggccagttatgacgag
acagcgctctgctccaacacattcaggattctgaagagcatggttgtcggttgggttcga
gagatcacgcagtatcataacgtctacgctgataaccaggtgatgcatttttaccgatgg
ttgcgatcacccagttctctgctgtacgacccggccctgcaccgcaccctcctcaacatg
atgaagaagatcttcctgcaacttgtggcagagttcaagcgcctgggatcatctgtgatc
tatgggaacttcaaccgtctcatcctgtgcaccaagaaacgccgcattgatgatgctatt
gcatacgtggagtacatcactaacagtatccactcaaaggagatcttccactctctgtcc
atcacattctctcgctgttgggagtttctgctgtggatggatccagctaactctggagga
gtgaagggaaagctgccttctagccttctgtatggagagcatgacaatgaaaagaagaaa
aagaagggtggagaagaggaggatggaagtgaggatgaggatgaagatgaagaaaaccaa
ggggaggatgaagaacaggatggggaggatgatgtggaagacttgattgaaagtaactgg
aacatcatgcagtaccttcctcagacagcatcctgtcagaaatactttctcatgatcatt
tcagcctacattgcagctgtctatcatagcatgagacaagaacttcgccgaaacacccct
ggtgctactcccattaagagacgaggagcgacccaagcatcccagcagcaaactggggat
gtcagtgcacttcctggtctgattacattctctcaggagtatgtgtcaagtgaactcaca
cagaacttcttcaccatcactcagaagattcagaagaaagtgtcaagcactcgtagtgtt
accctcccatctgagatgtttcctgttcttcctggttctcacttgcccctcaacaaccca
gctctggagtttattaaatacgtctgtcaggtgctctctctggatgccaatattgtcaat
caggtaaacaaactgaagcgagatcttttgcgattggtggacgttggagaattctcagag
gactcccagttccgtgacccctgcaagtcctacgtcctcccagaggtcatctgccaccat
tgtaacttctgtcgtgaccttgacctctgcaaagacccagcagtttcccaggatgggtca
gttcttcctcagtggttctgctcgaactgtcaggcccagtatgacacagagtccatagaa
atggccctggtggaggcgctacagaagaagctcatgagttacacactacaagacttggaa
tgtgccaaatgcaaaggagtgaaagaagcaaacatgcctctgtactgtaaatgtgccgga
gatttcaacctcagcttcaccacaaagagctttactgagcaggtggaagtgttccggaac
attgccgcccactataacatgaacttcctgctggagaccattgactgggtgcttagtatg
aatgcatag
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