Garra rufa (doctor fish): 141334895
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Entry
141334895 CDS
T11039
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141334895 (shoc1)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Meiosis-specific proteins
Others
141334895 (shoc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_ATPase
SHOC1_PDDEXK
SHOC1_HhH_tandem
SHOC1_2HhH
CUE
Motif
Other DBs
NCBI-GeneID:
141334895
NCBI-ProteinID:
XP_073696221
LinkDB
All DBs
Position
5:complement(49987172..50006715)
Genome browser
AA seq
1451 aa
AA seq
DB search
MNYCGRTKRNGSFMTVGYKGIDYIAEASARRRMMISLLELPVPFQLVSNIYPHNGHLQDN
AYRAPWKNKTSVCPLPVAGSVMDDLKAITHFSDCLERFNVLQTGRGLEEVVPSSNPASQC
SISTSEALWLLDGVESNTIKSPWEESFSPCRPDTCCDDLCLPEEVIFSDHLQQFKSHLPP
CQTMLQRLNIMTVSDPVFNSSVNLLEEIIFRRCASYDAILDEVTSATFTLNATEEFKKET
VLNEESLMLPVELQMDCLQRQEQNYSLAQVQDFLNVTREPVEECFPLKDLLKEVTSADKH
MFELEVLQMPESSFADITFKEPKSPVASRSYAEMELDLLVSPRNRTLCLPDLCISTRHLS
VEIQSPVYKQQFMSNSDYGNMEKAVWMAEKHPQYVARFLLAEPQVAKPLVCIQSLPELLT
LLKVEMEQVAEPKDIMDQFQLITSTAMPSEHVFKNLSNFTEKMSTEDCKTAVRKLHVDET
FSPLSIVKIHELLSKRASNAALPPSGFPTVVRHSQSNPLQSAVPTQVNKGTPVKFLLMEH
MSHQQDSSTVTTTTRDCKAAEIKQRKSSPPERRSMNSSRRAAPSEEKPIISKVVEMPLKS
SVKDTEVISSVHTLPKQPEQRRENMISKSSQLSNSLESRKRKNSVVQSHEDLNPLSSFLT
LIMIQKRSTQERSMQKPQRSSPASVDASVSQNSTGKALPENKLNAVNHVSETKRVASAVA
TETSFPHEKKQGTISRTVYVQATESQRDAYRELHALAMPSLCKLQQLGISALNNRDFGTL
SSELTRFLVKQQQRMLQTEQNGDSVFNEMALLHVLVTMKELVLLTSDLSRATDYLAKAKG
SCAQSCLDELLRKFEVLQYLSRKRQKPNPKLLELQEQISTWKNSHANHTKQVLVLTVNSV
NTELLAALNQVTGNSVSQVIPSEGKGKVVNKEVTERLSCSRCVVVCSQHVGPDFPWQSFS
VVFELYSAGHSPFGSVCSERNVSFISFSTAVPESNFSEESTAASYLDTIPFVLLVTDGLL
KSLKLQHTLETRYNMVLLERKHSPSALEFGGTKYDVITVDVNTAILIQELSELDMKIGVA
SERVIMRLTALSLQFSCCWLILHCAENYRALISSNVYISLIHIYSASVLFGNNKSEKFTV
KVLLVCEEEEIARYIYQISLHTLMNAERDGLSWLDRDWLSLQPTEAECCLQQFPCINPLV
AQLMLRRAPSLQWLLGASFSELQEMFPQIPHKVIKLFSDITAQSKVKTAKQKSENTPFSN
MNSQTHPPHPHPPPWAQDPDKPQLEPEDILSTSPFIAGHNQGRVKETCPRNELSHLDPAR
FHSYNLITPSQLSRGSTAASFWQPQGEGFIQNPDLVPGRAVPRGSAGVPLAPLPTPEVLG
GRNTVCGFNSGPQGQTHWSSPENDLPNNTGEKRKRGGGEDVHSVLPHCKRGKLLCERVPG
RNDGQTRLRFF
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgaattactgtggtcgaaccaaacgaaatggcagtttcatgactgtcgggtataagggt
attgattacatcgctgaggcctcagccagacgcagaatgatgatcagcttgttagaactt
ccagttccgttccagctggtcagtaacatctacccacacaatggacacctacaggacaac
gcttacagagcaccatggaagaacaaaacatcagtgtgtcctctaccagtggctgggtct
gtaatggatgacttgaaggccatcacacatttcagtgactgtttggagagatttaatgtg
ttgcagacaggaagaggtcttgaggaagtggttcccagctctaaccctgcctctcagtgc
agtatttctacttcagaagccctctggcttttagatggagttgaaagcaataccatcaaa
tcaccttgggaagagagttttagtccatgtagaccagatacatgctgtgatgatctctgt
ctgccagaggaggtgatattcagtgaccatctgcagcagttcaaaagccacctgcctcca
tgtcaaacgatgcttcagaggctgaacatcatgactgtctctgatcctgttttcaattca
tcagtaaatctcttagaagagattatttttaggcgctgtgcctcctacgatgccatttta
gatgaagtaacaagtgccacatttactttaaacgctacagaagagttcaaaaaagagaca
gtactgaacgaagagtcgctgatgttgcctgttgaacttcaaatggattgccttcaaaga
caagagcaaaattattccttggcacaagtgcaagattttctaaatgtcacacgagagcca
gtcgaagaatgttttcctttgaaggatcttctcaaagaagtcacctctgctgataaacac
atgtttgagttggaggtccttcaaatgcctgaaagcagctttgctgacatcaccttcaag
gagcccaaatctccagttgcttcgaggtcttatgcagagatggaattagacctgcttgtt
tcaccacgcaatcgtacactgtgtctaccagacctgtgtatttccaccagacatctgtca
gttgagattcagtcaccagtttataagcagcaattcatgtcaaacagtgattatggaaat
atggaaaaagctgtttggatggcagagaaacatccccaatatgtggctcgatttttactt
gctgaaccacaggtagctaagccactggtctgcattcagtcacttccagagcttctcaca
ctgctgaaggtggagatggaacaggttgcagaacccaaagacattatggaccagtttcag
ctcattaccagtacagcgatgccttctgaacatgttttcaaaaatctctccaactttact
gagaagatgtccacagaagactgtaagacagctgtgagaaagctacatgtggatgaaaca
ttctcaccactgtctattgtgaaaatacatgagttgctgagtaagcgtgcttcaaatgct
gcactgccaccttcaggttttcccactgtagttcgacattctcaaagtaacccactgcag
tccgctgtacctacacaggtgaataaagggacgcctgtgaagttcttgttaatggagcac
atgtctcaccaacaagacagttctacagtgacaacaaccacaagagactgtaaagccgca
gagataaagcaacgcaagtctagtccaccagaaagacgctctatgaattcctccagaaga
gccgctccttcagaagagaagcccatcatctctaaagtggttgagatgccattgaagtcc
agtgttaaagatactgaagtgatatccagtgtacacacacttcctaaacagccagaacag
aggagagaaaatatgatctctaaatcatctcagttatcaaactctttggaaagcagaaag
agaaaaaattctgtagttcagtctcatgaagacctgaatcctttgtcgtcttttctgaca
ttaataatgattcagaaacgttcaacgcaggaacgttcaatgcagaaacctcaacggagc
agtccagcatctgtagatgcaagcgtgagtcagaattctacaggaaaagccttgccagag
aacaaattaaatgctgtgaatcatgtctcagaaacaaaacgcgttgccagtgccgttgcc
actgagacaagctttccacatgaaaagaaacaagggactatcagcaggactgtatacgtc
caagccacagagagtcagagagatgcatatagggagctgcatgcattggctatgccctct
ctgtgtaaattgcagcagctgggcatctcagctttgaacaacagagactttggtactctg
tcttctgaactcacaagattccttgttaagcagcaacagagaatgcttcagacagaacaa
aatggggacagtgtgtttaatgaaatggctctgctgcatgttctggtcacaatgaaggaa
cttgttcttctcacatctgatctcagcagagcaactgattacctggcaaaggcgaagggt
tcatgtgctcaaagctgtctggatgagctgttgagaaagtttgaggtactgcagtatctg
agtcggaagaggcagaagcccaatcctaaactactggagctccaggagcagatcagcaca
tggaagaattctcacgctaaccacactaaacaggttctagttttgacagtgaacagtgta
aacacagagttgcttgcagctctcaaccaggtaacaggaaactctgtgtctcaagtcatc
cccagtgaaggaaagggtaaagttgtgaacaaagaagtgacggaaagactctcctgcagt
aggtgtgtcgttgtgtgcagtcagcatgttggtcctgacttcccgtggcagagtttcagt
gtggtttttgagctttactctgcaggacactcacccttcggcagtgtgtgttcagagaga
aacgtcagctttatctccttctccactgcagtgcctgaatccaatttctcagaagaatca
actgctgcatcatatttggacactattccgtttgtgctgctcgtcactgatggtttactg
aaaagcttaaagttgcaacacacactggagacaaggtacaatatggttctcctggagagg
aaacactctccatctgcactggagtttggcggaaccaagtatgatgtcatcactgtcgat
gtgaataccgccatcctcatccaggagctgagtgagttggacatgaagattggagtagcg
tctgagcgtgtcatcatgagactcacagccctctctctgcagttcagctgctgctggttg
attctgcactgtgctgagaactacagggcactgatttccagtaatgtgtatatcagtctg
attcatatctactctgcatctgtgctgttcggaaacaacaagtctgagaagttcactgtc
aaggtgttactggtgtgtgaggaagaagagatagccagatacatctatcagatctcctta
catacgctgatgaacgcagagagagatggactgagctggctggatagagactggctcagt
ttgcagcccacggaggcagagtgttgccttcagcagtttccctgcattaatcctctggtt
gctcaactgatgttgaggagagctccatcactgcaatggctgctgggagcttctttctct
gagctgcaggaaatgttcccacagatccctcacaaagtcattaagctcttcagtgacatc
acagctcagtccaaagtcaaaacagccaaacaaaagagtgagaatacacccttctcaaac
atgaacagccaaactcaccctcctcatcctcatccgcctccctgggctcaggatcctgat
aaacctcagttagagccggaggatatactgtcaactagcccgtttattgcaggtcataac
caaggaagagtaaaagaaacatgcccaagaaatgaattatcccatctagatccagctcgt
tttcactcatacaacctgataacgccaagtcagttaagtcgaggttcaactgcagcgagc
ttctggcagccacagggtgaaggattcattcaaaacccagatctagtgccaggccgagct
gttccacgagggtctgctggtgtccccttggctcctctgcctactcctgaagtgcttgga
ggcagaaacactgtgtgtggattcaactctgggccgcagggtcagactcactggagctca
cctgagaatgatctgcccaacaacacaggagagaagaggaagaggggaggaggagaagac
gtgcacagtgtgcttccacactgcaagagaggaaaactgctatgtgagcgagttccaggc
aggaatgacggacagaccagactgagatttttctga
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