Garra rufa (doctor fish): 141335004
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Entry
141335004 CDS
T11039
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
grf Garra rufa (doctor fish)
Pathway
grf03030
DNA replication
grf03410
Base excision repair
grf03420
Nucleotide excision repair
grf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141335004 (rfc5)
03410 Base excision repair
141335004 (rfc5)
03420 Nucleotide excision repair
141335004 (rfc5)
03430 Mismatch repair
141335004 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
grf03032
]
141335004 (rfc5)
03036 Chromosome and associated proteins [BR:
grf03036
]
141335004 (rfc5)
03400 DNA repair and recombination proteins [BR:
grf03400
]
141335004 (rfc5)
DNA replication proteins [BR:
grf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
141335004 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
141335004 (rfc5)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
141335004 (rfc5)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
141335004 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
141335004 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_14
AAA_24
RuvB_N
AAA_16
ResIII
DEAD
AAA_assoc_2
DUF815
PhoH
AAA_7
ATPase_2
AAA_5
TIP49
AAA_19
AAA_30
DNAX_ATPase_lid
AAA_2
Mg_chelatase
Thioredoxin_6
bpMoxR
Motif
Other DBs
NCBI-GeneID:
141335004
NCBI-ProteinID:
XP_073696358
LinkDB
All DBs
Position
5:complement(48193573..48202163)
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AA seq
334 aa
AA seq
DB search
MASTSKPQPQTRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTILACAKQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQSQMIPRL
EHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEEMVYTCTGHPLRSD
IANILDWALNKDFTTAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLA
DIEYRLASGTNEKIQLSSMVAAFQAVRDIVVSDG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacaagtaaaccacaacctcagacaagaaatttaccatgggttgaaaagtac
agaccacagacattagatgacctcatctcgcatcaagatatcctgagcacaattcagaag
ttcattagtgaagaccgattgccacatctgctcttctatggacctccaggaacaggaaag
acctctactatactagcatgtgccaaacagctgtacaaagataaagagttcaactccatg
gtcctagagctcaatgcatcagatgaccgtggcatagatgtggtgagggggccgatcctc
agctttgccagcacacgaaccatcttcaagaaaggctttaagttggtgatcctggacgag
gcggatgctatgacccaggatgcacagaatgctttaaggagagtcattgagaagttcaca
gagaacacacgtttctgtctgatctgtaactacctttcaaagatcatacctgctctgcag
tctcgatgcacacggtttcgttttggccccctgtcccagagccagatgattcccagacta
gagcatgtgatacagcaagagagcattgacatcactccagatggcatgaaggccattgtg
accctctcaacaggagacatgaggcgatcattaaacattttacagagtactcatatggcc
tatgggaaggtgacggaggagatggtgtacacatgtactggacatcctcttagatcagac
atcgccaacatactggactgggccctcaataaagacttcaccactgcatataaccaaatt
ctgcaactcaaaactctaaaaggtctggcacttcatgacattttaactgaagtccatctt
ctcattcaccgtgtggacttcccaccctccatccgcatgggcttgcttataaaacttgca
gatattgagtatcgtctggcctctggaaccaatgagaagatccagctgagctcaatggtt
gcagctttccaggctgttagagacatagtagtcagcgatggatag
DBGET
integrated database retrieval system
