Garra rufa (doctor fish): 141335212
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Entry
141335212 CDS
T11039
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
grf
Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141335212 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141335212 (ddx42)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141335212 (ddx42)
Spliceosome [BR:
grf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141335212 (ddx42)
Complex B
141335212 (ddx42)
Complex C
U2 SnRNP specific factors
141335212 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
141335212
NCBI-ProteinID:
XP_073696708
LinkDB
All DBs
Position
1:40044181..40056764
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AA seq
906 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFSLATGKKEEPRLPQQAHSAFGASGPPGGYGKNQQLSSFYKI
GTKRANFDEENAYFEDDEEESSSADLPYIPAENSPTRKQFQSGGGGGGGGGSDSEDDPLD
AFMAEVEDQAAKDMKKLEEKEKEKKLAKGIRDDIEEEDDQEAYFRYMAENPTAGLTQEED
EEEVDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFYIEHEELSSLTEVGVMELR
KKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGGRDMIGI
AKTGSGKTAAFIWPILVHIMDQKELEQGEGPIAVIVCPTRELCQQIHSECKRFGKVYGLR
SVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMG
FEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVTQIVE
VLPSGEKWSWLTRRLVEFTSAGSVLIFVTKKANCEELATNLNQEGYSLGLLHGDMDQSER
NKVITDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGV
AYTLLTTKDTSFAGDLVRNLEGANQSVSKDLMDLAMQNPWFRKSRFKGGKGKKLNIGGGG
LGYRERPGLGSEPTERSGGSTSGGGGGGAALGNYEAYKPSTGAMGDRMSALKQAFQAQYK
NHFVAASGVPPKLTTKSSSSSGWTSAGSLSSLPSGAPEGPDRTHLSYTPSPSSSFSPMLL
PPALSSGTKMSGFSSAGSLSSVSDSYSSSSSKEGSRSDRNAEDRGRHGDSHYHRHGDRYS
GGDRDRYGERDRHSDRDRHSDSRNGEGSHRDREGRSERDGGERSGSHKDSFAVPDPPKRK
KSRWDN
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggcccgagcggaaagcgaggctttggtttcgggggattctct
cttgcgactgggaagaaagaggaacctcgtcttccccaacaggcccactctgcatttgga
gcttcaggaccaccaggtggatatggcaagaatcagcagctttcgtctttttacaaaata
gggacaaaacgagccaatttcgacgaggagaatgcttattttgaggatgatgaagaggag
tctagcagtgcagatctgccatatatacccgccgagaactctcccacaagaaagcagttc
cagtctggaggaggaggaggaggaggaggaggctctgacagtgaggatgaccctcttgat
gctttcatggctgaggtggaggaccaagcggcaaaggacatgaagaaacttgaggaaaag
gaaaaagagaaaaagttggccaagggtatacgggatgacattgaagaggaggatgaccaa
gaagcatattttcgttacatggcggaaaacccaacagctgggctgacccaagaggaagat
gaggaagaagtggattatgacagcgatgggaaccccattgcccctactaccaaaaagatt
atcatgccactgccccccatagaccactcagagattgactatcctccttttgagaagaac
ttctatattgagcacgaggaactcagcagtctgactgaggttggagtgatggaactgaga
aagaaactcaacctgaaggtttcaggtgcagcgcctcctaagccagccaccagttttgcc
cactttggatttgatgagcagctcatgcaccagatccgtaaatctgagtacactcaaccc
acacccatccagtgtcagggtgttccaatagctctgggtggcagagacatgattggcatt
gccaaaactggcagtggaaagactgcagctttcatttggccaatactggtgcacatcatg
gaccagaaggagctggagcagggagagggacccattgctgtgatcgtctgccccaccaga
gagctctgtcaacagatccattctgaatgcaagcgattcgggaaggtatatggcctccgc
tctgtcgcagtttatggaggcggtagcatgtgggaacaagccaaagctctacaggaagga
gccgaaattgttgtgtgcaccccaggtcgcctaatcgatcatgtgaagaagaaggctaca
tctctgcagcgagtgacctacctggtatttgatgaagctgatcgcatgttcgatatgggc
tttgaataccaagtgagatccattgccagccatgtcagacctgatcgacaaactttgtta
tttagcgcaacatttcggaagaaaattgaaaagctggcacgagacattttggttgaccct
attcgtgttgtgcagggagacataggagaggctaatgaagatgtcactcagatagtggaa
gtgctgccgtctggggagaagtggagttggctgacacgcaggctggttgagttcacctca
gctggctccgtgctgatctttgtcactaaaaaggctaactgtgaggagctggctacaaat
ctcaatcaggaaggttatagcctagggctgctgcatggagacatggatcagagcgagagg
aacaaagtcatcactgactttaagaagaaaaatctgcctgttttagtagctactgatgtt
gctgctcgagggttggatattccatctatccgtacagttgtaaactacgatgtagcacga
gacattgacacacatacacatcgaattggtagaactggccgtgcaggagagaagggtgta
gcttacactctgctcaccactaaagacacttcatttgctggtgacctggttcgaaattta
gagggagccaatcagagtgtttcaaaggacctgatggacctggcaatgcagaatccctgg
ttcaggaaatctcgctttaagggaggaaaagggaagaagctgaatattggaggtggaggc
ctgggttacagagagagaccaggccttggatctgaacccactgagcgcagtggtggtagt
actagtggtggtggtggtggtggtgcggctcttggtaattatgaagcctacaaaccctct
actggagcaatgggagaccgtatgtctgccctaaagcaagcatttcaggctcagtataaa
aaccactttgtggcagcatctggtgttccacctaaactcaccacaaagtccagcagctcc
tctgggtggaccagtgcgggaagtctaagttctttgccttcaggagcaccagaggggcct
gatagaacccacctgtcctacacgccatcgccctcttcctcgttttccccgatgctgctg
cctcctgcccttagttcgggcaccaaaatgagtggcttcagcagtgcaggctccctgagc
tcagtttcagactcttactctagctcgtcttcaaaagaggggtcccgtagcgataggaat
gctgaagacaggggtcgtcatggagatagtcattatcatcgtcatggtgacaggtatagt
ggcggagaccgcgaccgctatggggaaagggaccggcatagtgacagagaccgtcatagc
gatagccgaaacggtgaagggagccatagggacagagaaggacggtcagaaagagatggg
ggtgagaggtcagggagtcataaagacagctttgcagttcccgatccccccaaacgtaag
aaaagcagatgggacaattaa
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