Garra rufa (doctor fish): 141335318
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Entry
141335318 CDS
T11039
Symbol
shank1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
grf Garra rufa (doctor fish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
SAM_1
Ank_4
SH3_2
Ank_5
SAM_2
PDZ_6
PDZ
FERM_f0
SH3_1
SH3_9
Motif
Other DBs
NCBI-GeneID:
141335318
NCBI-ProteinID:
XP_073696847
LinkDB
All DBs
Position
1:41194385..41366539
Genome browser
AA seq
2472 aa
AA seq
DB search
MTMPLSPLSSDEEQQRMLGNSQHLYPGAEEEEEEEEEEEMDDDGMDEEGEEENGELELDD
EEDVDDEDDIRRGPGRLRGGREEGHRQKGTMTGRLPGDRPLRPGNPGHTANPYSSNPGPT
HQAPANQQQQQNQRKLRERSSSNAPDDTHIAMMVFRIGIPDIKQTKCLRFNPDATVWKAK
QQVLCSLTESLRDVLNYGLFQPATDGHDAKFLEEERPLREYPQSFEKGVPYLEFRYKTRV
YKQTNLDEKQLAKLHTKASLKKFMDYIQAGAVEKVAKLIDKGLDPNYHDPDTGETPLTLA
VQTEPGGGEIIRLLVMGGAHIDFRAKDGLTPLHKAVRAHAHTALLTLLSLGASPDYKDRR
GLTPLYHTVLIGGDTSCCETLLYHRAKLGLRDENGWDETHQACQNGNSQHLEHLLFYGAD
SSSQNASGNTALHICALYNKESCARILLYRGASKDTKNNSGQTSFQVAVMSGHFELGEII
KNHRESDVVPFLESPKYAPQRRESSRTLGLPHPHPFLRANSDNSMNVPDWIAFPNATGSN
LVSVQGLKHGGTLRSSSSPRGARTRSPSRGRTGDRDDRSRQTRGRQGAGSISSQGTASGQ
RRRLYSAVPGRVFVATRSHSAQGEREISFNKGDKVKVLSVGEGGYWEGTVRGRTGWFPSD
CVEEVALRSLESRSESRSERAKRLFRHYTVGSYDSFDAPSDYIIKEKTVLLQKKDNEGFG
FVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGH
RQVVNMIRQGGNSLMVKVVMVTRNPDMEEGVRKKIPQQSKRLSTPAIALRSKSMTSELEE
MVDRASAPWKKKSEFESSQATEKKRTVYQMALNKLDEILAAAQQTISTNEAPGPRVQGVK
RERGRGFYNEPNFDQSGMGMTSSGAGLGYDRGQFVSGHGPPHGMLRQKSIGVPEEEKQFL
HPPAMKFARSLSVPGPDDIPPPPTTAPPEPPFSSAPPLGFRGKTSQQPSVSVSQSTSSSA
HYQLYSQSVHVTHGPRDRSPGPPAGSGTGDLAYSHAQAHPSVPSRTASRKVIGYTGDLAG
AGGAPGAKAAALRRGYSNAVPPTSVATVIPQQQQTTQSQPSRIDRSAIGAGAGAGGVPKG
GARRGKGPLVKQSKVEDLRQGQGTLEGKGSVEKSSIPIPTIIVKAPSTSSSGRSSQGSSM
EAEPPPAGESDSSKPQPVVPPPAPTVPPPAPPSMPAPPPPSLPSLRTQESLDFTSQFGAA
IVGAARRDRERFHEARRKSASFFLSAEEELGGAGEVGGRTQTSQQQLSSQPSPRLRPSKS
IDEGMFSGDTFIHHTRSMPPAFGLPEYSSPAPPGDYQPKSVPADFYGAGGRQQQQQQAST
TTFIHPLTGKVLDPSSPLGLALAARERALKDDGRMRRERTTEHHFTRQLSSIGAFPSSTA
QPTSHISYSMASSSSATSSAAQSSSSSSYLVTSSSLAATTTSTRPPSPRILRGAGSSWGE
EAGVGERADREAAGTSAPREGLRVRFSEDKTVHTHHYQSQHYQPTYKERERERQRERSRE
RERERDIEKAQAQLQHQTTQPTPQQPRRPSFLRMESEAGAYILSLTPPSPPPTTAPTRPT
AGAAGEGESGTSLMVLPPPAPSVDVDDEFVFADPLPPPLEFANSFDRGLSYSAMMSHNVA
ARQQLHPHPHPPPPPPPPPPPPPKDSFMSGFPPHTPLPSPQAGDSTTSSLTSYDSEVANL
TQSAQSPSPSSPNPLPPPSPSTLQPSGPPPPPSVSPPPPPTSYHRPFGLSQSQHLYNSTN
TAGRSSSPTPPPHSIPAPPAYRGPPAATSTPATSVSLRGASTVTASCSTTASTTVVSSTA
AAVTPHTRIATVSTVATGGSRRPSAEHHPPPSAAAAKSGESQETVVDSGIEELDSRSSSD
HHLDNILALSGSGVRERLERAGMGSLGGVGERLGATEVDRTSGADFLESYMSYLDGQTFE
MHNAKAASTATTYPKTQRYREGSRAGDLRRQTSTAPPAYHRRREEEEEEDEDEAEEGEEE
DVNIRDGYGMREGPGIARSSVMYFDRPRTPEIKPLWGDGSAGAAQSIGEGGVQTGGTYVE
ARKLHPPMSGMKASIINELSSKLQQRSKGTENWGVQRSLSRHRFSEDSTGALSPPSVRSS
SPSPVQLSQPALSPSPTPSSQPLYPNWARSPSPQPPAASSQPPPRSHSPVSPSSYSPYPT
SPKHRPVYRTKALEFQFIPSRESRKAESHHAQRRRAPSPLISPSDRPKLGPPRPSSLPIL
PTTPLYSSLYDLRGSITPPSPANPLGDPYFSPSPPLFAPSGAPPPPNSSLVVSRSLSPTH
FLSGTSSPPLHPIPPPTCLSYPHLPPPSPTKPFASKPLPYWTKYDVADWLGYLNLGEHRE
RFLDNEIDGTHLPSLTKDDYLDLGVTRVGHRMNIERALRRVMDRLSSSTFPISALSSRDE
RTDRRRDEANRS
NT seq
7419 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgccgctcagccccctctccagcgacgaggagcagcaaaggatgctgggaaac
agtcaacacctttatccaggggcggaagaggaagaggaggaggaggaggaagaggaaatg
gacgacgacggcatggacgaggaaggcgaggaggagaatggagagctggagttggacgac
gaagaagatgtggacgacgaagatgacatcaggcgaggaccagggcgtttgagaggaggc
agggaagaggggcacaggcaaaaaggcacaatgactggacgacttccaggagacagacct
ctacgacccggcaacccgggccacacggccaacccgtattcgtccaaccctggacccacc
caccaagcgccggctaatcagcagcagcagcaaaatcagcggaagctacgagaacgaagc
tctagcaacgcacctgatgacacacacatagctatgatggtctttcggattggcattcct
gatatcaaacagacgaagtgtctgaggttcaaccctgatgcaaccgtatggaaggcgaag
cagcaggtgctgtgtagtctaactgaatctctgagggatgtattaaactatggccttttc
caacctgctactgatgggcacgatgccaagttcctggaggaagagaggccgctccgcgaa
tacccacaatcctttgagaaaggagtaccctacctggagttccgctacaaaaccagggtg
tacaaacagacaaatctagatgaaaaacagctggccaaactacacacaaaggccagtctg
aagaagttcatggactacatccaggccggggctgtggaaaaggtagccaaacttatagac
aaaggacttgaccccaactaccacgaccctgatacaggagagaccccactcactctggcc
gtacagacggagccgggcggaggggagatcatcaggctgctggtgatggggggagctcac
attgactttagggcaaaggatggcttgactcctctacacaaggctgtcagagcgcacgca
cacactgctctactgacactgttgtctttaggggcatctcctgattataaggaccgccgt
ggactgacaccactttatcacactgtgctgatagggggcgacacctcctgctgcgagacc
ctcctctaccacagagccaagctggggctccgtgatgagaatggctgggacgaaacccat
caggcttgtcaaaatgggaactctcaacacttagagcacctgcttttttatggtgcagac
tcctcatcccagaatgcctcaggaaacactgccctgcacatatgtgctttatataacaag
gagagctgtgcccgcattctgctgtatcgaggagccagtaaggacacaaagaataacagt
gggcagacctccttccaggtggctgtgatgtctggccattttgagctgggagaaatcatt
aaaaaccatcgtgaatcagacgtagttccctttttggagtctccaaagtatgccccccag
aggagggagagttctcgtactcttggattgccccatcctcaccccttcttgcgggccaac
agtgacaatagcatgaacgtgccagactggattgcttttcccaatgctacaggatcaaac
ctggtctccgtgcagggtctaaagcatggcggcaccctgcgtagctccagcagtccccgt
ggagcacgaacccgttccccgtcccgcggcagaacaggtgaccgagacgatcggagtcgg
caaacacggggaagacaaggggcgggttctatcagtagtcagggcacagcaagtgggcag
cggcgccgtctctacagtgccgtgcccggccgtgtgtttgtggccacccgctcgcactca
gcccagggggagcgcgagatcagcttcaacaaaggagacaaagtcaaagtgttgagtgtg
ggtgaaggaggctactgggaggggacggttcgagggcgcacaggctggttcccctctgac
tgtgtagaggaggtggctctccgcagcctggagtctcgctcagagagccgcagtgaaaga
gccaagcgactcttccgacattacaccgttggatcctacgacagctttgacgcgcccagt
gactacataatcaaggagaagacagtcctcctgcagaaaaaagacaatgaaggttttggc
tttgtgctgagaggagccaaggctcagacccctatagaagagttcactcccaccccagcc
tttccagcactgcagtaccttgagtctgtcgacgagggaggcgtggcttggagagctggt
ctgcgaatgggagacttccttatcgaggtgaatggtcagaatgtggttaaggtgggacac
aggcaggtggtcaatatgatcaggcaaggtgggaacagcctcatggtcaaggttgtcatg
gttacccggaaccctgatatggaggaaggggtcagaaagaaaatcccacagcagagtaaa
aggctgagtacaccggctatcgctctgcgctccaaatccatgacatcagaactggaagag
atggtggacagagcctctgccccatggaaaaaaaaatcagagttcgagtcttcacaagct
acagagaagaagaggacagtttatcagatggctttgaataaactggacgagattttagca
gcagcacagcagaccatcagtaccaatgaggccccagggccccgggttcagggggtaaaa
agagaacggggcagaggcttttataatgagccaaatttcgaccagtcgggaatgggtatg
acatcatctggggcagggctaggctacgaccgtggtcaatttgtgtctggccacggccct
ccgcacggtatgctgcgacagaagtctatcggagttccagaggaggagaagcagttcctt
catcctccagccatgaagtttgcccgcagtctttcagtacctggcccagatgacatccct
cctccgcctactacagctccccctgagccccctttctcctcagctccccctcttggcttt
aggggcaagacatcccagcagccgtctgtttcagtgtctcaatccacttcctcttctgca
cattatcagctctactcgcagtcagtacatgtcacacatggacccagagacaggtcccct
ggaccacctgctgggtccggaacaggggaccttgcttactcacacgctcaagcccacccc
tctgtgccaagcaggactgcctccaggaaggtgattgggtacacaggggaccttgcaggg
gctggaggagcaccaggagccaaggctgcagcattgaggaggggctacagcaatgcagtc
ccacccactagtgtcgctactgtaattcctcaacagcagcagactactcagagccaacct
tccagaatagaccgcagtgcgataggggctggagcaggggcaggtggtgtaccgaaaggg
ggtgcccggagagggaaggggcccctggtgaagcagtcaaaggtggaggatctacgtcag
ggtcagggaacactggaaggaaaggggtcagtggagaagagctctattcctatcccaacc
atcatcgttaaagccccttccaccagcagcagtggtcgcagtagccagggcagcagcatg
gaggctgaaccgcctcctgcaggagagagtgacagttctaaaccccagcctgttgttccc
ccacctgcacccaccgttcctccgccagcccctccatctatgcctgcccctccaccccca
tcactgccatcacttcgtactcaagagagtttggacttcaccagccagtttggtgctgcc
atagtaggggcagcccgcagggatcgagaacgattccatgaagcaagacggaagagtgcc
tccttttttctttctgctgaggaagagttgggtggagcaggagaagtgggaggacggaca
cagacttcccaacagcagctgagttcccagccttcaccacgcctgcgaccatccaaatct
atagatgaaggcatgttctcaggtgatacttttatccaccacacacgcagtatgcctcct
gcctttggcctgcctgagtactcctcacctgctcctcctggggattaccagcctaagtct
gtacctgctgacttctatggggcaggaggccgacaacagcagcaacagcaagcctccacc
acaactttcattcacccactaacggggaaagttctggatccttcatccccactaggcttg
gcattggctgcacgggaacgtgccttgaaagatgatggtcgcatgcgcagggagaggacc
actgaacatcattttacccgtcagttgtccagcattggggcctttccctcatccactgca
caaccaacgtcacacatctcctactcaatggcctcgtcttcctctgcaacctcctctgct
gctcagtcctcaagctcctcctcgtacctagttacctcctcatcactagctgccaccacc
acatccactcggcctccatctcccaggatcctgcgtggagcaggaagcagctggggtgag
gaagcaggggttggagagcgtgcagatagggaggctgctggcacctctgctcccagagaa
ggcttaagggttcgtttctcagaggataaaacggtccacacacaccactatcagtcacag
cattatcagcccacctacaaggagcgtgaacgagagcggcagagggagaggtcacgagaa
agagagagggaaagagacatagaaaaagctcaggcccagttacagcatcagaccacgcag
ccaacaccccagcagcctcgacgaccctcgttcttgaggatggagagcgaagctggggca
tacatcctttccttgacaccaccttctccacctccaacaacagcccctacacgacctaca
gcaggagctgcaggtgaaggtgaaagtggcactagtctgatggtcctccctcccccagct
ccctcagtagatgtagatgatgagtttgtgtttgctgatcctctccctccacctctggag
tttgccaatagttttgatagaggtttgagctactctgcgatgatgtctcacaatgtggca
gcccgccagcagcttcatcctcatcctcatcctccaccaccacctcccccaccacctcct
ccccctccaaaagactcctttatgagtgggttcccacctcacacacccctgccctcaccc
caggcaggagattccacaacttccagccttacttcctatgacagtgaggtcgccaacctc
acccagtcagcccagtctccctctccatcttcccccaacccactaccgcctccatcccct
tccaccttgcagccctctgggccaccaccacctccttctgtatcacctccgccaccaccc
acctcctaccatagaccttttggcctatctcagtcacaacacttatacaacagtacaaat
acagccggacgctcctcttctcccacaccacctcctcactctattccagctccacctgcc
taccggggccctccagcagcaacatccaccccagcaacttcggtatctctcagaggcgcc
tcaactgtgaccgcaagctgttccacaactgcttctacaactgtcgtctcttctactgct
gccgctgtcacgccacacacacgcatagcaactgtttcaacagtagctacagggggtagc
aggcggcccagcgccgagcatcatccgccacccagtgcggctgcagctaagagtggcgag
tcccaggagacagtggtggattctgggattgaggagctggacagccgaagcagcagtgac
catcacttagacaacatccttgcactcagtggtagtggggtcagagaaaggttggagaga
gcagggatgggtagcctaggtggagttggagagagacttggggcaacagaggttgacaga
acaagtggggcagactttttagagtcgtacatgagctatcttgatggacagacttttgaa
atgcacaatgccaaagccgccagcactgcaaccacctacccaaaaacacagaggtacaga
gaagggagccgggctggagaccttcgacgccaaaccagcacggcaccccctgcataccac
cgtcgtagggaggaggaagaggaggaggatgaggatgaggcagaagagggagaggaggag
gatgtgaatatccgtgatggctatggaatgagggaagggccagggatcgctcgctcctct
gtaatgtactttgaccggccccgcactccagagataaaacctctgtggggtgatgggtcg
gccggagcagcgcagtccataggggagggaggggtccagaccggggggacatatgtggag
gcacgtaaactgcatcctcccatgtccggtatgaaggcaagcatcatcaatgaactaagc
tccaaattacagcagaggagcaaaggaacggagaactggggagttcagagatccctgagc
agacataggttctcagaggactccacaggtgcactgagtcctccctctgtccgctctagc
tccccatctcctgttcagctctctcagcctgccttgtctccctccccgaccccttcttcc
cagccgctttacccaaactgggctcgatctccttcccctcagccccctgccgcctcatcc
cagcctcctcctcgatctcactcacctgtttctccctcttcatattcgccataccccacc
tcacccaaacaccgacctgtttaccgcaccaaagccctggagttccagtttattcccagc
cgtgagtcacgtaaggcagagtcacatcacgctcagcgcagacgagcgcccagcccgtta
atttctccctctgaccgccccaagcttggccctccccgcccctcctcccttcctattctc
cccaccacacccctctatagcagcttgtatgacctccgtggttctattactccaccctca
cctgccaatcctcttggggacccctacttctctccctctccccctctctttgccccctcg
ggggctccgcctcccccaaattcctctctggtggtctctcgatctttgtcccccacccac
ttcctgtcagggacttcatccccaccactccaccccattcctccacccacttgcctgagt
tatccccacctcccgcccccttcacccaccaaacccttcgcctccaaaccactcccatac
tggaccaagtatgacgttgcggattggctgggctacctgaacctgggtgagcacagggag
cgtttcctagacaacgagattgatggcacgcaccttccctctcttaccaaggacgactac
ttggacctgggtgtgaccagggttggccatcgcatgaacatagagagggcgctcaggaga
gtgatggacaggctgtcttctagtactttccccatttctgccctctcctctcgagatgaa
cggacagacagaaggagagacgaggccaaccggagttga
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integrated database retrieval system
