Garra rufa (doctor fish): 141335347
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Entry
141335347 CDS
T11039
Symbol
tnca
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
grf Garra rufa (doctor fish)
Pathway
grf04510
Focal adhesion
grf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141335347 (tnca)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141335347 (tnca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141335347 (tnca)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141335347 (tnca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_2nd
NDNF
EGF
hEGF
REJ
Big_5
NDNF_C
Glyco_hydro_66
Motif
Other DBs
NCBI-GeneID:
141335347
NCBI-ProteinID:
XP_073696871
LinkDB
All DBs
Position
5:51638130..51734410
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AA seq
1720 aa
AA seq
DB search
MGSGGLTFSCLVLATLMTLNHAGLVKKMIRHRRETLTIPGIHNVTLPSSSQPVIFNHVYN
IKVPGSALCSVDLDSPAGSDLEQKDAPSAAEVTDHTVDGGNQIIFTHRINIPKQACGCSD
GLPDLKELLNRLEMLEGEVSTLREQCATETTCCGAQATGVIGTKPFCSDHGNYSTETCGC
ICEPGWKGPNCTVPACPGDCTDQGRCVNGKCECFDGFTGEDCRVETCLVDCGENGRCVNG
VCVCNEGFSGDDCTETDCLNNCLGRGRCVDSECVCDEPWTGFDCSELICPHDCYDRGRCD
NGTCYCDKGFTGEDCGVVACPNDCSGRGFCIDGRCVCDAGYSGEDCSSLTCPNDCNQRGR
CFNGVCICETGYFGEDCGKLSCPNNCNGRGRCINGRCECDVGYQGHDCSEFSCPNDCNNR
GRCVNGQCVCEEGFGGEDCSVKTCPSDCYGRGQCVDGKCVCFADFTGEDCSELSCPNNCL
NRGRCVAGQCVCDEDFTGEDCSQRKCPNDCLGRGRCMDGRCVCEEGFEGLDCSVPTCPAN
CNNHGRCVNGKCVCDEGFTGDACGERSCPNDCSGIGQCVDGRCVCDEGYIGEDCSEVSPP
EDLTVTDVTTEKLNLTWRNEMLVTEYLVTYVPTSPGGLQMEFRVSGDRTSATVAELEPGI
EYLINVYAVLNNKKSVPVSARAATYLPQPDGLKFKSISATSVEVLWDQLNFPFDGWELIF
RNMKEENGKIVTNLTPSQTNFEQAGLGPGQEYEVTLSVMKNKTRGPETSSTVVTKIDSPE
QIDVGDVTDRSAVISWPSPVAEVDGFRVSYGPSTDPLVHRDVDLPATDTQYSLEDLKPDT
EYKVSLSSKKGDVSSEPIFESFTTGLDAPTELKAVDQTENSITLEWKNSRSTIDGYRIKY
GPIAGGAHGEDMFPRKAGETTWATITGLKPGTEYGIGVTAVQNERESEPATTNALTDLDP
PRDLDVRDSTETTLELVWKRPRAKISTYRLAFVSADGRREEVELPAATSTYTLSGLNPGM
RYTVTLVAERGRRRSAPATVTASTEEQRPQVGSLSVSDVSWDSFNVSWTIEDGSAFDSFV
IEVANSAGPERQNLSVSGDARSLWMSGLSPDTSYRITLFGVHQGSILGSIYTQAATEAEP
EIEHLFVSDVTPESFRLAWTAEDDVFDRFVLKVRDSRKHSHPREFVVPGDERTKVLTQLL
GGTEYEIELYGVTLEHRSQPVTAVARTGLGVLRDLLFSDITDTTAVASWTLPRSQPDSYR
ITYIPIQGGAPMVLMADGSQSQVSLINLIPGETYQVSVVAVKGLEESEPVSDTFTTALDM
PRSLTAVNVTDTKALLLWQPAAATVDGYVITYSADTVPPISEQVSGNTVEFEMSSLAPAT
QYTVNVYAIRNRQKSAPATTDFITDVDAPRDLVASNIQTDSAVLTWTPPRAAITGYILTF
ETSDGDVRELNLEPSATSHSLSDLRSSTEYTIRLQAVAEDKRSKQISTVFSTVGMRYKTA
KDCSEALLNGETSSGPYTIYIGGDEKQPVRVYCDMTTDGGGWMVFLRRHNGKLDFNRNWR
NYSAGFGDANDEFWLGLSNLHKITTASQYELRVDLRDGQESVFAVYDKFYIADPRSRYKI
QIGAYSGTAGDSLSYHQNRPFSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDS
SHSKGINWFHWKGHEHSIPFAEMKIRPVNFRNLEGRRKRS
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaggaggcctgacattcagctgtttggttttggcaaccctgatgactctaaat
cacgccggcctggtaaagaagatgatcagacaccgacgggaaactctgacgattcccggc
atacacaacgtaaccctcccgagctcttcccaaccagtcatttttaaccacgtctacaac
atcaaggttcccggtagcgctttatgctcggtggatctggactctcctgccggctcggat
cttgagcagaaggatgctccatctgccgcagaagtaacagaccacacagtagacggcggt
aatcagatcatattcacccatcgcattaacatccccaagcaggcgtgtggctgttcggac
ggactgccggacctgaaggagctcctgaatcggctggagatgttggagggcgaggtgtcc
acgctcagagagcagtgcgccacagaaaccacctgctgcggcgctcaggccacaggtgtt
ataggaacaaagcccttttgcagcgaccatggaaactacagcacggagacctgcggctgt
atctgtgagcccggatggaagggccccaactgcaccgttcccgcctgtcccggagactgc
accgatcagggccgctgcgttaacggaaaatgcgagtgtttcgatggcttcacgggtgag
gactgcagggtcgagacctgtctagttgactgtggtgagaacggccgttgcgttaacgga
gtgtgcgtttgcaacgaaggcttctccggggacgattgcacagagacggattgtctcaac
aactgtttgggacgcggccgctgcgttgatagcgagtgcgtctgcgacgaaccctggact
ggatttgattgctccgaactcatctgtccgcatgactgctacgaccgcgggcgatgcgac
aacgggacgtgttattgcgacaaaggcttcaccggagaggactgcggggtggtcgcttgt
ccaaacgactgctctggaagaggtttctgcatcgacgggcgttgcgtatgtgatgctggc
tactccggcgaggattgttccagcttgacctgtccgaacgactgcaaccaaagagggcgc
tgtttcaacggcgtgtgcatttgtgaaacgggttacttcggagaggactgtgggaagctt
tcttgcccaaataactgcaacggtagagggcgctgcatcaacgggcgctgtgaatgcgac
gtcggataccaaggccacgattgttcggagtttagctgcccaaatgattgcaacaaccgt
gggcgctgcgttaatggccagtgcgtttgcgaagagggattcggcggtgaggactgcagc
gtcaaaacctgcccgtcggattgctacggccgaggccagtgcgtcgatgggaagtgcgtc
tgctttgcagactttactggggaagattgcagtgaattgagctgcccaaacaactgcctg
aaccgtggacgctgtgttgcgggccagtgcgtttgtgacgaagactttaccggagaggac
tgcagtcagaggaagtgtcccaatgactgtcttggccgcggacgctgcatggacggacgg
tgcgtttgcgaggagggttttgagggcctggattgctccgttcccacctgtcctgcaaac
tgcaataaccacggccgctgtgtcaacgggaaatgtgtctgtgacgagggattcactgga
gatgcctgtggagaaagaagctgtccgaatgactgcagtggcattgggcaatgcgtggac
ggccgctgtgtgtgcgatgagggctacattggcgaggattgctcagaagtctcgccaccg
gaagacctgaccgtcacggatgtgaccacggagaagctgaacctcacatggaggaacgag
atgctggtgactgagtatttggtgacgtacgtcccgacttcaccaggcggcctgcagatg
gagttccgtgtgtctggagatcgtacgtctgccaccgtcgcagagctggagccgggaatc
gagtatctcatcaacgtctatgccgtcctcaacaataagaagagcgttcctgtcagcgcc
agagcggccacatatctgccgcagcctgacggcctgaagtttaaatccatcagtgctaca
tctgtggaggttttgtgggatcagctgaactttccgttcgacggctgggagctcatcttt
cgcaacatgaaggaagaaaacgggaagatcgtgaccaatctgacaccttcccagaccaac
tttgagcaagcgggactggggccgggacaggaatatgaagttactttgtctgtcatgaag
aacaagaccagaggacccgaaacaagctcgactgtagttacaaaaatcgattctccagag
cagattgatgttggcgatgtgactgaccggtctgcagtgatctcctggcccagtcccgtg
gctgaggtggacgggttcagggtgtcttacgggccaagcacagacccgttagtccatcga
gatgtcgacctcccagccacagatacgcagtacagcctggaagacctgaaaccagacact
gaatacaaagtgtctctcagttcaaagaagggagacgtgagcagcgagcccatctttgag
agcttcaccacaggtctggatgcccccactgagctcaaagctgttgatcagactgaaaac
agcatcacactggagtggaaaaacagccggtcaactatcgacggataccgtattaagtac
ggcccgatcgcaggaggtgctcatggtgaagacatgttccctagaaaagcaggggagaca
acgtgggctacaattacaggcctgaagcctggaacggagtacggcattggagtcacagcg
gttcagaatgaaagagagagtgagccagcgaccaccaacgcactgaccgatctggatcct
ccacgagacctggatgtacgagactccaccgaaaccaccctggaactggtctggaaaagg
cctagggccaagatctccacctacaggctagcgttcgtctctgcggacggccgacgggaa
gaagtcgagctgcctgctgccacatccacctacaccctgagcggcctgaaccctggcatg
cgctacaccgtcaccctcgtggcagaacgcggacggaggagaagtgctcccgccaccgtc
accgcatccacagaggagcagaggccgcaggttggcagtctgagtgtgtctgatgtatct
tgggatagcttcaatgtgtcctggaccattgaggatggctctgcctttgacagttttgtg
attgaagtggcaaattcagcaggtccagaaagacagaacctgtcggtatctggtgatgca
cgtagtttgtggatgtctgggctcagtcccgacacgtcctatagaattacgttattcgga
gtgcatcagggctcgatcctggggtccatctacactcaagcagctacagaggcagagcca
gagatcgagcaccttttcgtgtcggacgtcacccctgagagtttccggctggcctggaca
gcagaagacgacgtttttgatcgatttgtgctcaaagttagagattcgagaaagcattcc
caccctcgagagttcgttgtcccaggcgatgaaagaaccaaagttttaactcagcttttg
gggggaaccgagtacgaaattgagctttacggggtcacgttggaacaccgctctcaaccc
gttaccgctgttgccagaacaggccttggagttcttcgggaccttcttttctctgatatc
acggacacaacagctgttgcctcctggactctaccgcgatcccagccggactcctacaga
atcacttacatcccaatccaaggaggtgctcccatggtcctgatggcggacgggtcgcag
tctcaggtttcgctgataaatctgattcccggagagacgtatcaggtgtcggttgttgca
gtgaaaggtctggaggagagcgaaccagtgtctgacacttttacaacagccctagatatg
ccccgcagcctgactgctgtcaatgtgactgacacaaaggcattgttgctgtggcaaccc
gcagcggcgaccgtggatggatatgtgatcacatacagcgcagacaccgtgccaccgata
tcagagcaggtttctggaaacacggtggagtttgagatgagctcactggctccagcaact
caatacactgtcaatgtttatgccataagaaaccgacagaaaagtgctccagcgaccaca
gactttattacagatgtggacgctccacgtgatctggttgccagtaatattcagacagac
agcgccgttctcacctggacgccgccgcgggccgccatcaccggatatatcctgaccttt
gaaacatctgacggcgatgtcagggaactgaatctagagccatctgcgacctcacacagt
ctgtctgatctgagaagcagcactgaatacaccatcagactacaggccgtcgccgaggac
aagaggagcaaacagatcagcactgtcttcagcacagttggtatgcgctacaaaaccgcc
aaagactgctcagaagctctgctgaatggagagacgtcttccggtccgtacaccatttac
atcggtggagacgagaagcagccggtccgtgtttactgtgacatgaccactgacggcggc
ggttggatggtgttcctacggcgccataacggcaagctggatttcaacaggaactggaga
aactactctgcaggattcggtgacgcaaacgatgagttctggctcggactttcaaatctt
cacaaaatcacaacggccagccagtacgagttgcgtgtggacctgcgtgacggacaggag
agtgtgtttgctgtctacgataaattttacatcgcagatcctcgttcccgctacaagatc
cagattggtgcatacagtggtaccgcaggtgattccttgtcatatcaccagaacagaccc
ttctccacctacgacaatgacaatgacattgctgtcaccaactgcgccctgtcctacaag
ggagcgttctggtataaaaactgccatcgagtgaacctgatgggcaaatatggagacagc
agtcacagcaaaggcatcaattggttccactggaaaggccacgagcattcgattccattc
gcggagatgaagatccggccagtaaatttcagaaacttggaaggcagacggaaaagatca
tag
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