Garra rufa (doctor fish): 141335460
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Entry
141335460 CDS
T11039
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141335460
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141335460
Spliceosome [BR:
grf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
141335460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
DEAD
Ank_2
HA2_N
Ank
AAA_19
nSTAND3
PhoH
AAA_22
ATPase
Ank_4
Ank_5
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
141335460
NCBI-ProteinID:
XP_073697034
LinkDB
All DBs
Position
5:complement(56059620..56102255)
Genome browser
AA seq
1392 aa
AA seq
DB search
MSRGGQKSHTNPSKQTASMKAKGFKDIRIDEEVKIAVNIALERFRYSDDKELDFPSSLTN
SERAFIHRLAQSLGYVSKSRGKGSSRYLTVKKKDGTEGSRSTMSCSLSHSSKHMVQSLLQ
RFPITSKERGELQPRTERAVFTSPDASDSKSRTSGRLSHGISQVPQKRGPSELDCFRRVL
PVYERQEEIIKTIRENQVVLVLGETGSGKTTQIPQFLLDDCCRNAIPCRIFCTQPRRLAT
IAVAERVASERGEKIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTMMSGDKALSTVTHV
IVDEVHERDGLTDFLLTKMKELVQKTPSLKLILSSAALDVNLFVRYFGACPVIHIKGSPY
EVKQLFLEDILRTTGYTNKDMMKYKKEAQKEERQQTSLTEWCDAHQDVLQPEPQREKTST
CVLQENDLLDDGGDSIFSQMSEKDVATLEPWLLKEMDACISSIFLNQDADAFVQLFNLIL
NENISVDYSHSETSATPLMVAAGRGFLSQMEQLLSMGANVNVKASNGWTALDWARHFSQT
EAVDLLESHIWCAEAGELDESSLVQTASSEMNPEDQELLKAYHHSFDDEKVDLDLILHLL
FNICQSSDEGAVLIFLPGYDEIVSLRDRILFDDKRFTDHQQRFQVFILHSSMQTSDQKKV
LRNTPKGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAYDALNNVTMLKMVWISKASA
LQRKGRAGRCRPGMCFHLFSRLRFNNMLEHQIPQLLRMPLQELCLHTKLLAPISCPIAEF
LSKAPEPPHVHTVKHAVQMLKTIDAMDPWENLTELGYHLADLPVEPHLGKMVLCAVVLKC
LDPILTIACTLAHRDPFVLPAQAAQKRASMLCRKRFTANTFSDHMALLRAFQAWQKARSD
GWERAFCEKNFLSQATMEIIVGMRTQLLGQLRATGFVRARGGGDIRDVNQNSENWAVVKA
ALVAGMYPNLIHVDRHNLTLMGSKEKKVRFHPMSVLSQPQYKKIPPANGQAAAVESLPTD
WLIYDEMTRAHRIASVRCCSVVTPLTVAIFSGCAKLPSSALQESAVHRGADSVNDSSDSE
TEDRSSARLAHINIDDWLHFKLHRETAELVFGLRQRWQSLFLRRIRSPSKSCSQLDEATI
RTLVSVLSAEELSAGLQQPTGIGQRPRPMTADEPSQAPSCRSTGRWSAAEPEQQEEEERS
SPDRPRLTSQLKNHRAHHSRHLGDENGPVKSTDGPSSPSSGKVHQCCSSPSARPPRSSVR
YFIMKSSNVRNIDLSQQRGIWSTTPNNENKLTRAFLESSAVFLVFSVQGSGHFQGYARMT
SAVSGERCLDWGSAGLGGVFGVEWIRKESLPFQLTQQLLNPWNDNKRVQISRDAQELEPQ
TGSQLLQLWERI
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcggaggccagaaatcccacacaaacccgtccaaacagacggcttctatgaaa
gctaaaggattcaaagacatcaggatcgatgaagaagtcaaaatcgctgtcaatattgcg
ctggagaggttccggtacagcgacgacaaagagctggatttcccttcttcactgacgaat
tctgagagagcgttcatacatcggcttgctcaatcactgggttacgtctcaaaaagcaga
gggaaaggctccagtcgatatcttacagtgaagaagaaggatgggacggaggggtctcgc
tccaccatgagctgtagtctctctcacagctccaaacacatggtccagagcctcctgcag
aggttccccatcaccagtaaagagcgcggagaactacagccacgaacagagagagccgtc
ttcacttcccctgatgccagcgacagtaaaagcaggaccagcggtcgtctgagtcacggt
atatctcaggttcctcagaagcgaggcccatctgagctggactgtttccggagagtgctg
ccggtgtacgaacgtcaggaggagatcatcaaaaccatcagggagaaccaggtggtgctg
gtcttgggcgaaaccggctcaggaaaaaccacacagatccctcagttcctgctggacgac
tgctgccggaacgccattccctgccggatcttctgcactcagcccaggaggctggccacc
atcgctgtggcggagcgtgtggcgtctgagcgcggcgagaagatcggacagaccatcgga
tatcagatccgtctggagagcagagtttcccctaaaaccctgctgacgttttgcacgagt
ggagttctactgcggacgatgatgtctggagacaaagccctgtccaccgtcacacacgtc
attgtggacgaggtgcacgagcgagacggtctgaccgacttcttactcaccaagatgaag
gagctggtccagaagacgccgtctctgaagctcatcctgtccagcgctgctctggacgtc
aatctctttgtcagatacttcggagcctgtcctgttattcacatcaaaggctccccatat
gaggtcaagcagctctttctggaggacatcctgcggaccaccggatacaccaataaagac
atgatgaaatacaagaaggaggcgcagaaagaggagagacagcagacgtctctgacagag
tggtgtgacgctcatcaggacgtcctacagccggaacctcagagagaaaagacgtccact
tgtgtcctgcaggagaacgacctcctggatgacggcggtgacagcatcttcagccagatg
agcgagaaagacgtggccacattagagccctggctgctcaaagaaatggacgcctgcatc
tccagcatcttcttgaaccaggacgccgacgccttcgtacagctcttcaatctgatcctg
aacgagaacatcagtgtggattacagtcacagcgagacgagtgccacgccgctgatggtg
gccgccggacgaggctttctcagccagatggagcagctgctcagcatgggcgcaaacgtc
aacgtcaaggcctccaacggctggacggctcttgactgggccagacacttcagtcaaact
gaggctgtagatctgctggagtctcacatatggtgtgctgaagcaggggagctggacgag
tcgtctctggttcagacggcctcctcagagatgaatcctgaagaccaggagctgctcaaa
gcgtatcatcacagcttcgacgatgagaaagtggacctggatctgatcctgcatctgctc
ttcaacatctgccagagctctgatgagggagcagtgctgatattcctgcctggctacgat
gagattgtctctctgagagaccgcatcctctttgatgataaaaggtttacggatcaccaa
cagaggtttcaggtgttcatactacactccagtatgcagacgtctgaccagaagaaggtt
ttgaggaacactcctaaaggcgttcgcaaaataattctctccaccaacatcgcagagacc
agtattacagtcaacgatgtggtttttgtcatcgactccggaaaagttaaagagaaagcc
tatgatgctctgaataatgtgaccatgctgaaaatggtttggatatcgaaggccagcgct
ctgcagaggaagggcagagcgggccgctgcagaccaggcatgtgtttccatctcttcagt
cgtctgaggttcaacaacatgctggaacatcaaatacctcagctgctgcgcatgccgcta
caggaactatgtctgcacactaaactcctggctcccatttcctgtccgatcgctgagttc
ctgtctaaagcgcctgagccgccacacgtgcacacggtcaaacacgccgtacagatgctg
aagaccatcgacgccatggacccctgggagaacctgacagagttgggttatcacctggct
gatctgcccgtggagccgcatttagggaagatggttctgtgtgcggtggttctgaagtgt
ttggaccctatcctcaccatcgcctgcaccctcgcccacagagacccgttcgtgcttccc
gctcaagccgctcagaaacgcgcctccatgctgtgcaggaaacgcttcaccgccaacacc
ttcagcgatcacatggctctgctccgcgcctttcaggcctggcagaaggctcgcagtgac
ggctgggaaagagcgttctgcgagaagaacttcctctctcaggccaccatggagatcatc
gtcgggatgcgaacgcagcttttgggacagcttcgagctacaggttttgtgcgagcgagg
ggcggcggcgatatccgcgatgtcaatcagaactcagagaactgggccgtggtgaaagcc
gctctggtcgcaggcatgtatccaaacctgatccacgtggatcgccacaacctgaccctc
atgggctccaaagagaagaaggttcgcttccacccgatgtctgtcctcagccagccgcag
tacaagaagatccctccagccaatggtcaggcagcagcagtggagtccctgcccacggat
tggctgatttatgatgagatgacgcgagctcataggatcgccagtgtcaggtgctgttct
gtggtcacgcccctcaccgtcgccatattttcaggatgcgctaaactcccgagctccgct
ctacaggaatccgccgtccaccgaggagctgacagtgtgaatgacagcagtgatagtgag
acggaggatcgttccagcgctcgtctggctcacatcaacatcgacgactggctccacttc
aaactccaccgagagacggcggagctggtgttcggtcttcggcagcgctggcagagtttg
ttcctgcggcggatccgctctccgtctaaatcctgctctcagctggacgaggccaccatc
cgtacgctggtgtcggtgctgtcggccgaggagctgagcgcaggtctccagcagcccacc
ggtatcggccagagacctcgacccatgaccgcagacgaaccttctcaagcgccgtcctgc
aggagcaccggccgctggagcgcagcggagcctgagcagcaagaggaggaggagcggagc
agccccgacaggcctcgactgacctctcagctaaagaaccacagagctcatcactccaga
catctaggagacgagaacggccccgtcaagagcactgatggaccctcgtccccgtcctca
ggaaaagtacatcagtgctgctcgtctccatccgcgcggccgccgcgatcgagtgtgcgc
tacttcatcatgaagagcagtaacgtgaggaacatcgatctgtctcagcagaggggaatc
tggtccacgactcccaacaacgagaacaaactcacacgagccttcctcgagagcagcgcc
gtcttcctcgtcttctccgtacagggatccggacacttccagggttacgcccgcatgacg
tcagcggtgagcggcgagcgctgtctggactggggttctgcgggtctgggcggcgtgttc
ggagtggaatggatccgtaaggagagtctgccgttccagctcacgcagcagctgctcaac
ccctggaacgacaacaagagagtccagatcagcagagacgctcaggaactggagccgcag
acaggaagtcagttactacagctctgggagcgaatctga
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integrated database retrieval system
