KEGG   Garra rufa (doctor fish): 141335501
Entry
141335501         CDS       T11039                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
grf  Garra rufa (doctor fish)
Pathway
grf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:grf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    141335501 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:grf03041]
    141335501 (prpf4)
Spliceosome [BR:grf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    141335501 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_EML PRP4 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_IFT140_1st Ge1_WD40 WD40_like WD_LRWD1 Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_WDR11_1st Tricorn_2nd
Other DBs
NCBI-GeneID: 141335501
NCBI-ProteinID: XP_073697089
LinkDB
Position
5:24054054..24066901
AA seq 507 aa
MSDEDEAPVVKKARIFYGSLEEKEKERLSREGISTAAKDAVKAGIEAGNINISSGECMEM
EERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKEDEKAKRTQDEYQQTWYHEGPASLKEARVWLAKYSLPRAVERLAA
ARAQKEIPESTRTVKQQELHKALRNVNNFCSQIGDDRPISHCQFSPNSKMLVTASWSGLC
KLWKVPDCTLVRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGSVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDAFARVWDLRTGRCIMFLEGHHKEIYSINFSPNGFHVATGSGDNTCKVWD
LRQRRCIYTIPSHENLVSSVKFQPNDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSYDRTFKLWMSE
NT seq 1524 nt   +upstreamnt  +downstreamnt
atgtcggatgaagacgaagctccagttgtgaagaaggcaaggatcttctatggaagcctt
gaagaaaaggagaaggagcgtctcagccgtgaaggaatatctacagctgccaaagatgct
gttaaagctgggattgaggctggaaatattaatatctccagtggtgagtgcatggagatg
gaggaacgtgtgagtgagcgacaggctgaagtgctggcagagtttgagcgtagaaagaga
gcgagacaaatcacagtctccactgatgatgtagaggtcaaggcctgcctccgagctctt
ggcgagccaatcacgctgtttggggaggggcctgcagagagacgagagagattgaggaac
attctttcagtagttggtcctgatgccttgaagaaatcgaagaaagaggatgaaaaagca
aaacggacacaggatgagtatcagcagacatggtatcatgaaggacctgcatctctgaaa
gaggctcgtgtttggttagccaagtattcactacccagggcagtggaaaggttagctgct
gcaagggctcaaaaagagattcctgagtctacaagaacagttaaacagcaagagcttcac
aaggctctccggaacgtgaataacttctgcagtcaaattggcgatgaccggccaatatct
cactgccagtttagccccaactctaagatgcttgtgactgcatcatggagtggcttgtgt
aaattgtggaaagtcccagactgtacacttgtacgcacattaagaggtcacaataccaac
gtgggagcgattagctttcaccctcaagccacactcacactcgaggagtcggatgtcaat
atggcctcctgcgctgcggatggatctgttaagctgtggagtttagacagtgatgagcct
gtagcagacattgaagggcactctatgagggtggctcgggtggcctggcatccctctgga
cggtttctgggcacaacttgctatgataactcatggcgactttgggatcttgaagctcag
gaagaaattctgcatcaggagggtcatagtaaaggtgtccacgacctgcacttccaccca
gacggctctctggcaggaactggtggtttggatgcgtttgctcgtgtctgggaccttcgg
actggccgttgtatcatgttcctggaaggccaccacaaagagatttacagcatcaatttc
tcaccaaacggctttcacgtggcaacaggaagtggagataacacctgtaaagtgtgggac
cttcgtcaaagaaggtgtatatacacaattccttcccacgagaaccttgtgtcctcagtc
aagttccaacctaacgatgggcattttttgctgactggtgcgtatgacaacacagccaaa
gtgtggacccatcctggctggtcacctttgaagactctggcggggcatgaagggaaggtc
atggggcttgatctttcacctgacggacagctcattgcaacctgctcgtatgaccgaacc
ttcaaactctggatgtcggaataa

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