Garra rufa (doctor fish): 141335784
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Entry
141335784 CDS
T11039
Symbol
rnf43
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
141335784 (rnf43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141335784 (rnf43)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141335784 (rnf43)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141335784 (rnf43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_5
zf-RING_UBOX
FANCL_C
zf-RING_Vps41
zf-C3HC4_3
ECSCR
Motif
Other DBs
NCBI-GeneID:
141335784
NCBI-ProteinID:
XP_073697441
LinkDB
All DBs
Position
5:53791497..53975796
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AA seq
852 aa
AA seq
DB search
MRVPVRRLAGLWPWLLMAALQVVLGHTGLELAAAVESERSAPRATIKVSLLKQEPTSKPI
ILEGVFAGGSAGYAEGKLMQSHPLSLCNTSEDDRQESSFISIVKLESPESKVPQCQPLLD
KARLAIQRGAEAVIFDITDDPGAAQELRDSGLLPRPVVLVKSSDAEEMMGLVNKNEEAMV
IIDIMLETQKWPHYDVGILLTVALVVLAIIMIFALRFRCRSNRTWDSVHQQTMRAISRLE
TRTYSSQGCSGSQRSRGPLGSNSSSNSSPVCAICLEEFMEGQELRIISCAHEFHKECVDP
WLLQHRTCPLCMHNIMGKLPQGSDLASRQPQRSRMAPPPPEHSQAFLLPHHYSNQHPYPQ
HHVPFSLRPHYPRNPSGPLPQLGHYGNSPPLHPRTLRCFPSRPLGASCAYHLAPDVHHGR
PHRTGGHGCRTGGHHYAAPRRSCHRCPGGPLRNTSGSRMHHVVSPANHPTHHHLPRGGGS
HSRQDDGSCSGGSYHTERSGYLADGPASDSSSGSCHGSSSDSVLNCTDVSLQGVYGSWST
FRSSLSSDYDPFVYCGPGKAPRRGSMEATQRPRSLDSVVNRTGGGSGGDAGAICPEEQQQ
QVAVFSHVHYHRHRHHYYEDGELSQGPGRGSDEDQGASSSATAAAGPCLVTKDKDPPGCQ
VQHQSCHCPKTDLSSMRVEDRDPDPVSSSGASVILPSPPLTSPSPPCCHKGPGWTTSRKA
AGCPLEAPSPVVHFHQSLDLQDDCSIHIHYGQGAGSYCCAPPPDMAPTLLPVPLILDSTG
MTDWPCCSGAHVVWQKQVQQAHSEPQLLGPTSGMDRPLCMAHHGPGDELPMDLCLYCQSL
HNSQGSEEESGV
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgagggttcctgtgcggcgattggccgggctctggccgtggctgctcatggctgccttg
caggtggtgttgggccacacgggcctggaactagccgccgctgtggagtccgaacgctcc
gcaccccgagccacgatcaaggtgtcactgctgaagcaggagcccaccagcaagcccatc
atcctagaaggggtgtttgccggaggcagtgcaggctatgctgaggggaaactgatgcag
tctcacccgctgtctctgtgtaacaccagtgaggatgaccgtcaggagagcagcttcatc
agcatcgtcaaactcgagagtccagagagcaaagtgccgcagtgccagccgctgctggat
aaagctcgtctggctattcagagaggtgctgaggctgtcatctttgacatcacagatgat
cctggtgctgctcaagagctgcgtgattcaggtttattgcctcgtccagtggtgctggtg
aaatcatcagacgcagaagaaatgatgggactcgtcaataaaaatgaagaagccatggtg
atcatagacatcatgttggagacacaaaaatggcctcactatgacgttggcatcctgttg
actgtggcactggttgtgttggccatcatcatgatctttgctctacgcttccgctgcagg
tccaacagaacctgggactctgtgcaccagcagaccatgcgtgccatcagcaggttggaa
acgcgcacttacagctctcagggttgctctggttcccagcgctctcgcgggcctctaggg
tcaaacagcagctccaattccagtccagtctgtgccatctgtcttgaggaattcatggaa
ggccaggaattgagaatcatctcctgtgctcatgagttccataaggagtgtgtcgacccc
tggctcctacaacaccgcacctgcccactatgcatgcacaacatcatgggtaaactgcct
cagggttcagatctggcatcccgtcagccccaaaggagtcgaatggcaccccctccacca
gagcacagtcaagccttcctccttccccatcactactcaaaccaacacccttatccccag
caccatgtgcccttttccctgcggcctcattacccccgtaacccctctggacctttaccc
cagttgggccactatggcaactctccccctcttcacccacggactctccgttgctttccc
agcagaccgctgggtgctagctgcgcgtaccacttggctccggatgtccatcacggacgt
ccacacaggacaggcgggcacgggtgtcggaccggggggcatcactatgcggcccccaga
aggtcgtgccaccggtgtcccggaggacctttgcggaatacttcgggttctcggatgcat
catgtggtgtcacccgcaaaccatccaactcatcatcacctgccacgtggaggaggctcg
cacagtcgacaagacgacggcagctgctcgggagggagttaccatacggagcggagcggt
tatcttgcagacggaccagctagcgattccagctcgggatcgtgccatggctcgtccagc
gactctgtgttgaactgtacggatgtcagtctgcagggtgtctacggcagctggtccacc
tttcgtagctcactcagtagcgattacgacccgtttgtctattgcggaccgggcaaagct
ccacgcagagggagcatggaggccacgcaaaggcctcgttccctggactcggtggtgaac
cgaaccgggggtggaagtggtggtgatgccggtgccatttgccctgaagaacagcagcag
caggtggctgtgttcagtcacgttcactatcataggcatagacaccactattacgaggac
ggggaactcagtcaagggcccggccgaggctctgacgaggatcaaggggcctcgtcctca
gccacggcagcggccggcccttgtctcgtaactaaagacaaagacccccccgggtgtcag
gtacagcaccagtcttgccactgccccaaaacagacctcagttcaatgagggttgaggat
agagacccagaccctgtttcctcttcaggtgcctccgtgatccttccctcccctccttta
acctctccgtcccctccctgttgccacaaaggcccagggtggacgaccagtcggaaagca
gctggctgtccattggaagcgccttcgccggttgtgcacttccatcaaagcttggacctt
caggatgattgtagcattcatatccactacggacagggagcgggaagctactgctgcgca
cctccaccagacatggcccccacgctgctgccggtacccctgatcttggactcgacgggt
atgaccgactggccgtgctgtagcggggcacatgtggtgtggcagaagcaggtgcagcag
gcccattcggagcctcagctcctgggacccacttctggaatggacagacctctgtgtatg
gcccatcatggcccaggggacgaacttcccatggacctctgtctgtactgccaaagtcta
cacaatagtcaggggtcagaggaagagtctggtgtttga
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