Garra rufa (doctor fish): 141336239
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Entry
141336239 CDS
T11039
Symbol
pcdh10a
Name
(RefSeq) protocadherin-10a
KO
K16499
protocadherin delta 2
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
grf04515
]
141336239 (pcdh10a)
Cell adhesion molecules [BR:
grf04515
]
Cadherins
Protocadherins
141336239 (pcdh10a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
CDC13_N
Motif
Other DBs
NCBI-GeneID:
141336239
NCBI-ProteinID:
XP_073697894
LinkDB
All DBs
Position
6:complement(43412835..43434728)
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AA seq
1019 aa
AA seq
DB search
MILIFLFFSILDGGLSQLHFSVPEEQERGTVVGNIAEDLGLDITKLSARRFQTVPSSRTP
YLEVNLENGALVVNERIDREEICRQTVPCLLHLEVFLENPLELFRVEIEVMDINDNPPSF
PETDITVEITESATPGTRFPVENAFDPDVGTNALSTYAITTNNYFYLDVQTQGDGNRFAE
LVLDKPLDREQQAVHRYVLTAVDGGQPQRTGTALLVVKVLDSNDNAPTFDQSVYSVSLRE
NSPVGTLVIQLNATDMDEGQNGEIVYSLSSHNPPRIRDLFNIDSRTGRIEVTGEVDYEES
STHQIYVQAKDMGPNAVPAHCKVLVKLIDVNDNTPEISFSTVTESVSEQAVPGTVIALLS
VTDRDSGENGQMTCELHGEVPFKLKSSFKNYYTIVTDGPLDREKAESYTLTVVAKDKGVP
SLSTSKSIKVHVSDENDNAPRFMQSVYDVYVTENNVPGAYIYAVSAVDPDVGQNAYVTYS
ILECEIQGMSILTYVSINSENGYLYALRSFDYEQIKEFSFMVHAKDSGAPELTANATVNV
IIVDQNDNAPSIIAPLGKNGTAREHLPRSAEPGYLVTRIVATDADDGENARLSYSILRGN
ELGMFRMDWRTGELRTARRVSSKRDPPHPYDLLIEVRDHGQPPLSSSASINVVLVDSIVE
GRSGDRGSVKSKEGSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLNIYTCMAGDS
CCQCCSRQARGRKKKLSKSDIMLVQSTNVASTAQVPVEESGSFGSHHQNQNYCYQVCLTP
ESAKTDLMFLKPCSPSRSTDTEHNPCGAIVTGYADQQPDIISNGSILSSEVKTHFISPSE
QHFIFIQYEMCTSLASHYHIKSSAFQEADIVSSKDSGHGDSEQGDSDHDATNRGHTAGAD
LFSNCTEECKALGHSDRCWMPSFMPGDSRQGADYRSNLHVPGMDAVPDTEVQESEVPGDA
CNRADDRSFSTFGKDKSHHGTLTRHELHTLLPSARAPYKPNYLSSEDTGEKTSYYKFGC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgattttgatatttctctttttctctatcttggatggagggttatcgcagctgcacttc
tcggttccggaggagcaggagcgcgggacggttgtgggaaatatcgccgaagatctgggg
ctggacatcaccaaactttccgcgcgccgtttccagaccgtgcctagctcgcgcacgccg
tacctggaggtcaacttggagaacggagcgctggtggtgaacgagcgcatcgacagagag
gagatatgtcgccagaccgtcccgtgcctcctgcacctcgaagtgtttttggagaacccg
ctcgagctgttccgcgtcgagatcgaggtcatggatattaacgacaatccgccgagtttc
ccagagacggacatcaccgtggagatcaccgagagcgccacgccgggcacccgcttcccg
gtggagaacgccttcgaccctgatgtggggactaatgccttgagcacatacgccattacc
accaacaactacttttatttggacgtacagacgcaaggcgacggcaaccgcttcgcggag
ctcgtgctggataaacccctggaccgagagcagcaggcggtgcacaggtacgtgctcacc
gccgtggacggagggcagccgcagaggaccggcaccgcactgctagtggttaaagtgttg
gactccaacgacaacgcgcccacgttcgatcaatccgtttactctgtgagcttgcgcgag
aactcccccgttggcacgctcgttattcagctcaacgccactgatatggacgagggccag
aacggagagattgtttactctctaagtagtcacaatccgccgcgcattcgggatctgttt
aacatagactcgcgcaccgggcggatcgaagtgaccggtgaggtggattatgaggagagc
agcacccatcagatctatgtgcaggcgaaagacatgggaccgaacgccgtgcccgcgcac
tgcaaagttctggtcaaactcatcgacgtgaacgacaacacgccggagattagtttcagc
acggtcacggagtcggtaagcgagcaggctgtcccgggcacggtgatcgctctgctgagc
gtcacggaccgtgactccggcgagaacggacagatgacctgcgagctgcacggcgaggtt
ccgttcaaactcaagtcgtctttcaagaactactacacgatcgtcacagacggtccgctg
gatcgcgagaaagcggagtcctacacgctaacggtggtcgccaaagacaagggggtgccg
tctctctccacgagcaagtccatcaaagtgcacgtctccgatgagaacgacaatgcacct
agattcatgcagtcggtttacgacgtgtatgtgacggagaataacgtcccgggcgcttac
atttacgcggtgagcgccgtggatcctgatgttggacagaacgcctatgtcacttactcc
atattggagtgcgaaatacagggtatgtccattttaacctacgtgtctatcaactctgag
aacggctacttgtacgcgctgcgctcttttgattacgagcaaataaaagagttcagtttt
atggtgcacgccaaagactccggtgcgcccgagttgacggccaacgccaccgttaatgtc
atcatagtggaccagaacgacaatgctccgtctataattgcgcctctgggcaaaaacggc
accgcgagggaacatttgccccgctcagcggagccgggatacctggtgacccgtattgtg
gccacggatgcggatgatggtgaaaacgcgcgcctgtcttacagcatcctccgtggaaac
gagctcgggatgttccggatggactggagaaccggcgagctacgaacagcgcgccgggta
tccagcaaacgggacccgccgcacccgtacgacctgttgatcgaggtgcgcgaccacgga
cagccgccgctctcgtcctctgcgagcatcaacgtagtgctcgtggacagtatagtggag
ggccggagtggcgaccgggggtcggtcaagtccaaagagggctcgctggacctcacactc
atcctcatcatcgcgctcggctccgtgtccttcatattcctcctcgcaatgattgtgctg
gcggtgcgctgtcaaaaagacaagaaactgaacatctacacctgcatggccggagactcg
tgctgtcagtgctgcagtcgccaagcgcgtgggcgcaagaaaaagctcagcaaatcggac
atcatgctcgtccagagcactaacgtggccagcaccgcacaggtgccggtggaggagtcg
ggcagcttcggctcgcaccatcagaaccagaattactgctaccaggtgtgcctaacaccg
gagtctgccaaaaccgacctgatgttcctcaaaccgtgcagcccgtcccggagcacagac
acagagcacaacccgtgcggggcaatcgttaccggatacgcggatcagcaaccagatatc
atctcaaacgggagcattttatccagcgaggtgaaaacacattttatttccccttccgag
caacactttatcttcatccagtatgaaatgtgtacttcattagcatcccattaccatatt
aaatcttcagcgtttcaagaggcagatatcgtcagctcgaaagacagcggacatggagat
agcgagcagggagacagcgaccatgacgccaccaaccggggccacacagcaggagctgat
cttttttccaactgcactgaagagtgcaaggctctgggtcactcggaccgttgttggatg
ccctccttcatgcctggcgacagtcgccagggtgccgattaccgtagcaacctgcacgtc
ccgggaatggacgcggtgccggacactgaggtacaggagagcgaggttccgggcgatgcg
tgcaatcgggccgatgatagatcattctccacgttcggcaaagacaagtcacaccacggc
acgctcacacgccacgagctacacacactcttaccaagcgcccgagcgccttacaaaccc
aactatctgtcatctgaagacactggtgaaaaaacatcttattacaaatttggctgctga
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