Garra rufa (doctor fish): 141336282
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Entry
141336282 CDS
T11039
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141336282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141336282
Enzymes [BR:
grf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
141336282
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141336282
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_R3HCC1L
RRM_Thc1
G_path_suppress
Motif
Other DBs
NCBI-GeneID:
141336282
NCBI-ProteinID:
XP_073697939
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All DBs
Position
6:2211218..2225434
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AA seq
594 aa
AA seq
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MEVTRQNFKEVLPEVCVAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKH
SMNFLLFQFGICTFRYDQNQSTYITKAFNFYIFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFRSGIPYLTQEEESQLREQYEERRSQINGAGPALYTPPSGMSVCNVPEDQRDFI
RTVEQKVEALLKNSEQTLDLEPCTGFQRKLIYQTLNSKYSKGLHVETLETEKKERFIQIS
KVDEEERRRREQQKQQREQEELNDAVGFSRVIRAISKSGKLVVGHNMLLDVMHTINQFCG
PLPEELDDFKEVAMSVFPRLLDTKLMASTQPFKEIISNTSLAELHRQLREKPFKSPTTGT
LFLMRVIDIPYLNMSGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDVSA
FVCLSQTEQVQIAVNTSRYAESYRIQTYAEYLQSRQKNTHTSRKWADDGWADTSYSAAAS
GYSRLHAVKRSISPSLEEQNHNADSSWTNYSGVKKIKTDGSCSQTYADVAGACDWPRLQP
DEGGASVSPVQEEAEPEESSANQSQGKRGRRHKKRKSDASETTPPVLFDVPQVW
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcacgagacagaattttaaggaggttcttccagaggtgtgtgtcgctgtgcag
gaggccgatttcatctcgatagacggagaattcacaggaatcagtgatggtccatcagtc
agtgctctgaccaatggtctggacacaccagaggagagatacacgaaactgcggaagcac
tccatgaacttcctgctcttccagttcggcatctgcaccttcagatacgaccagaatcaa
tccacgtacatcactaaagccttcaacttctacatcttccccaaacccttcagccgcacg
tctccagacatcaagttcatctgtcagagctccagcattgatttcctggccagtcagggc
ttcgacttcaacaaggtgttccgcagcgggatcccatacctgacgcaggaggaggagtct
cagctgagggagcagtatgaggagaggcggagtcagatcaatggggcggggcctgccttg
tacacgcccccctcagggatgagcgtctgtaacgttcctgaagaccagagagacttcatc
aggacagtggagcagaaggttgaagctctactgaagaactcagagcagactctggatctg
gagccctgcaccggctttcagaggaagctcatctatcagacactcaactcaaagtattct
aaaggtcttcatgtggagacgctggagactgagaagaaggagcggttcattcagatcagt
aaggtggatgaagaggagaggaggaggagggagcagcagaagcagcagagagagcaggag
gagctgaatgacgctgtgggcttctccagggttatcagagccatctctaaatctggtaaa
ctggtggtgggtcacaacatgctgctggacgtcatgcacaccatcaatcagttctgtggg
ccgctgcctgaggaactggatgactttaaggaggtggccatgtctgtgtttcccaggctg
ttagacaccaagctgatggcgtccacgcagcccttcaaggagatcatcagcaacacatca
ctggctgaactgcacagacagctgagagagaaaccctttaaatcacccaccaccggtacg
ttattcctgatgagggtgattgacattccttacctgaacatgagtggacctgacctgcag
cccaagagagatcatgtcctgtacgtcaccttccctaaagagtggaagaccagcgacctg
taccagctcttcagcgccttcgggaacatccaggtgtcgtggatcgatgacgtgtctgca
ttcgtgtgtctcagtcagacggagcaggttcagatagccgtgaacaccagccgctacgcc
gagagctaccgcatccagacctacgccgaatacctgcagtccagacagaagaacactcac
accagcaggaagtgggctgacgacggttgggcggatacttcctacagcgccgccgcctca
ggctacagccggctgcatgcggtcaagaggagcatcagtccgtctctagaggagcagaat
cataatgcagacagcagctggacaaactacagcggcgtcaagaagatcaagactgacgga
agctgttcgcagacgtacgctgacgtggctggcgcctgtgattggcccagactgcagcct
gatgaaggaggagcctctgtgagtccggtgcaggaggaggcggagcccgaggagtcttca
gccaatcagagtcaaggtaaaaggggccgcaggcacaagaagaggaagtcagacgcttct
gaaacgacgccaccggtgctcttcgacgttcctcaggtttggtag
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