KEGG   Garra rufa (doctor fish): 141336307
Entry
141336307         CDS       T11039                                 
Symbol
xpo1a
Name
(RefSeq) exportin-1
  KO
K14290  exportin-1
Organism
grf  Garra rufa (doctor fish)
Pathway
grf03008  Ribosome biogenesis in eukaryotes
grf03013  Nucleocytoplasmic transport
grf03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:grf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    141336307 (xpo1a)
   03008 Ribosome biogenesis in eukaryotes
    141336307 (xpo1a)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    141336307 (xpo1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:grf03019]
    141336307 (xpo1a)
   03009 Ribosome biogenesis [BR:grf03009]
    141336307 (xpo1a)
   03016 Transfer RNA biogenesis [BR:grf03016]
    141336307 (xpo1a)
   03036 Chromosome and associated proteins [BR:grf03036]
    141336307 (xpo1a)
Messenger RNA biogenesis [BR:grf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     141336307 (xpo1a)
Ribosome biogenesis [BR:grf03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    141336307 (xpo1a)
  Pre-60S particles
    141336307 (xpo1a)
Transfer RNA biogenesis [BR:grf03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    141336307 (xpo1a)
Chromosome and associated proteins [BR:grf03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     141336307 (xpo1a)
SSDB
Motif
Pfam: CRM1_C Xpo1 CRM1_repeat_2 CRM1_repeat_3 CRM1_repeat IBN_N Sec7-like_HUS TPR_TNPO3_IPO13_2nd BspA_v
Other DBs
NCBI-GeneID: 141336307
NCBI-ProteinID: XP_073697978
LinkDB
Position
6:8743257..8760621
AA seq 1071 aa
MPADMTMLADHTARQLLDFSQKLDITLLDNVVNSMYYDVGSQQRLAQEVLTNLKDHPDAW
TRVDTILEFSQNMKTKYYALQILESVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDANSV
EKEGVYIAKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMIILKLLSEEVFD
FSSGQMTQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY
IFETKLISTLVYKFLNVPMFRNVTLKCLTEIAGVSVSQYEEQFVNLFSLTMIQLKQMLPL
STNIRLAYSNGRDDEQNFIQNLSLFLCTFLKEHGQLIEKRLNLRETLMEALHYMLLVSEV
EETEIFKICLEYWNHLAAELYRESPFSTSTSPLLSTSQHFDVPPRRHLYLPVLSKVRLLM
VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYADTERIMTEKL
HNQVNGTEWSWRNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAII
ASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFV
QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQAVQERLIEKYMLL
PNQVWDSIIQQATKNVDILKDPETVRQLGSILKTNVRACKAVGHPFVLQLGRIYLDMLNV
YKCLSENISSAIQSNGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVGENFVPPL
LEAVLIDYQRNVPAAREPEVLSTMATIVNKLGAHITGEIPKIFDAVFECTLEMINKNFEE
FPEHRTHFFYLLQAVNSQCFPAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTM
LQNIAQEEGAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISI
TLNAGTSANNQSYVQEYVANLLKTAFPHLQDAQVKVFVTGLFSLNQDIPAFKEHLRDFLV
QIKEFAGEDSADLFLEEREAALRQAQEEKHKLQMSVPGILNPHELPEEMCE
NT seq 3216 nt   +upstreamnt  +downstreamnt
atgccggcagacatgaccatgttggcggatcacacagcacggcagttgctggacttcagt
caaaagctagacatcaccctgctggacaatgtcgtcaactccatgtactatgatgtggga
tctcagcaaagactggcacaagaagttctcaccaacttgaaggaccacccggatgcctgg
accagagtggacaccatattggagttctcccagaacatgaagacaaaatactatgctctt
cagatactagagtcagtgatcaaaacgcgctggaagattcttccacgaaaccagtgtgaa
ggaattaagaaatatgttgtcggactgattatcaagacttcctctgatgccaacagtgta
gagaaggaaggggtttacatagcaaagctcaacatgatcctggtgcagattctgaagcag
gagtggccgaagcactggcccacattcatcagtgacattgtgggagcgagtcgcaccagt
gagagcctgtgtcagaacaacatgatcatcctaaagctcctcagtgaggaggtgtttgac
ttttccagcgggcagatgactcaggtcaaagccaaacacctaaaggacagtatgtgcaac
gaattttcccaaatattccagctgtgccagtttgtcatggaaaattcccagaatgcccct
ctggtccacgccaccttggagaccctccttcgattcctgaactggattccgctgggctac
atttttgagaccaaacttatcagcacgctggtgtacaagtttctgaatgttccgatgttc
cggaacgtcactctaaaatgtctgacggagatcgcaggtgtcagtgtcagtcagtacgag
gagcagtttgtgaacttgttcagtctcaccatgatacagctcaaacagatgctgcctctg
agcacaaatatccgtctggcgtattcaaatggaagagatgatgagcaaaacttcatccag
aacctcagtctgtttctctgcaccttcctcaaagagcatggacagctgatagagaagaga
ctcaacctcagagagacgcttatggaggccctgcattacatgctgttggtgtctgaggtg
gaggagacggagatctttaagatctgtctggagtactggaaccatctggccgctgagctc
tacagagagagtcccttctctacttccacctctccgctgctgtcgaccagccaacacttc
gacgtgccgccccgcagacacctctacttgcctgtgctttccaaggtgcgtcttctgatg
gtgagtcgcatggccaaaccggaggaggttctggtggtggagaacgatcagggcgaggtg
gtgagagagttcatgaaggacaccgactccatcaacctctacaagaacatgagagagact
ctggtctatttgactcatttggactatgccgatacggagcggatcatgacagagaagctt
cataatcaagtgaacggtaccgagtggtcctggaggaacctgaacacgctgtgctgggcc
atcggctccatcagtggtgccatgcatgaggaggatgaaaagagattcctcgtcacagtc
attaaggacctgctgggtctgtgtgaacagaaaagagggaaagacaacaaggccatcatc
gcctctaacatcatgtacatcgtcggccagtacccacgattcctcagggctcactggaag
ttcctcaagactgtcgtcaacaagctctttgagttcatgcacgagacacatgatggtgtg
caagacatggcctgtgacaccttcatcaagatcgctcagaagtgcagaaggcattttgtg
caggttcaggttggggaggtgatgcccttcatcgatgagatcctcaacaacatcaacacc
atcatctgtgacctgcaaccgcagcaagtgcacacattctacgaggctgtgggatacatg
atcggtgcacagacagatcaggctgtccaggagcgcctgatcgagaaatacatgcttctt
cccaaccaggtgtgggacagcatcatccagcaggccaccaagaacgtggacatcctgaaa
gacccagagacggtgcgtcaactaggcagcatcctgaagaccaatgtaagagcgtgtaaa
gccgtgggtcaccccttcgtcctgcagctaggccgcatttacctggacatgctcaacgtc
tacaagtgcctgagcgagaacatctcttctgccatccagagcaacggtgagatggtgacc
aagcagcctctgatacgaagcatgcggacggtgaagagagagacgttgaagctcatctcc
ggatgggtcagccgctccaacgacccacagatggtcggagagaactttgttccacctttg
ctggaggcggttcttattgactatcaaaggaacgttccagcagctcgagaaccagaggtg
ctcagcactatggcaaccatcgtcaacaagcttggcgctcacataacaggggagatcccc
aagatattcgatgctgtgtttgaatgcaccctcgaaatgatcaacaagaactttgaggag
ttccccgagcacaggacgcatttcttctacctgctgcaagccgtcaactcccagtgtttc
ccagcattcctgtccatcccaccagcacagttcaaactggttctggactccatcatctgg
gccttcaaacacaccatgaggaacgtggctgacacagggcttcagatcctgttcacgatg
ctgcagaacatcgcacaggaagagggagcagctcagagcttctatcagacctacttctgc
gacatcctgcagcacattttctcggttgtcacggatacgtctcatactgctggtctgacg
atgcatgcctccatcctcgcctacatgttcaacctggtggaagaaggtaaaatcagcatc
actttgaacgcaggcacctcggccaacaatcagtcttacgtgcaggagtacgtggccaat
ctgctgaagactgccttcccacatctgcaagatgcccaggtgaaggtgtttgtcacaggt
ctgttcagcttgaatcaggacattcctgcttttaaagagcacctcagggacttcctggtc
cagatcaaggagtttgctggcgaggactccgcagatctgttcctggaggagagggaagcg
gctctgcgtcaggctcaggaggagaaacacaagctccagatgtctgtcccgggaatcctc
aaccctcacgagctcccggaggaaatgtgtgaatga

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