Garra rufa (doctor fish): 141336387
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Entry
141336387 CDS
T11039
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
grf Garra rufa (doctor fish)
Pathway
grf04137
Mitophagy - animal
grf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
141336387
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
141336387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141336387
03009 Ribosome biogenesis [BR:
grf03009
]
141336387
04131 Membrane trafficking [BR:
grf04131
]
141336387
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141336387
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
141336387
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
141336387
Membrane trafficking [BR:
grf04131
]
SNARE
SNARE associated proteins
Others
141336387
Autophagy
Aggrephagy
Other aggrephagy associated proteins
141336387
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
141336387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_5
CDC48_2
AAA_33
AAA_22
AAA_2
TIP49
AAA_28
RNA_helicase
NPHP3_N
AAA_14
Vps4_C
nSTAND3
Mg_chelatase
AAA_17
Parvo_NS1
AAA_18
ATPase_2
DUF815
IstB_IS21
AAA_7
ABC_tran
ATPase
AAA_24
ResIII
Sigma54_activat
TsaE
NACHT
NB-ARC
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
141336387
NCBI-ProteinID:
XP_073698079
LinkDB
All DBs
Position
6:complement(4230431..4245076)
Genome browser
AA seq
805 aa
AA seq
DB search
MPAPGALDPKSEDLSTAILKQKTRPNRLIVDEANNEDNSIVCLSQVKMEELQLFRGDTVV
LRGRKRRQTVCIVLTDDTCGNERVRMNRVTRNNLRVRLGDVISIHACPDVKYGKRVHVLP
IDDTIEGLTGNLFDVFLKPYFLEAYRPVHKDDIFLVRGGMRAVEFKVVETDPSPHCIVAP
DTIIHCEGEPIKREDEEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPGLFKAIGVKPP
RGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP
AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRVHVVVMAATNRPNSVDPALR
RFGRFDREIDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQISTETHGHVGADLAALCSEA
ALQAIRKKMILIDLEDDSIDADLLNSMAVTMDDFKWALSQSNPSALRETVAEVPQVNWED
IGGLDEVKRELQELVQYPVEYPEKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQAN
FVSIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKARGGGAGDAGGAAD
RVINQILTEMDGMTNKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDMLSRSAILR
ANLRKSPIAKDVDLAYLSRITEGFSGADLTEICQRACKLAIREAIEAEIRAERQRQAKKE
AAMDDDYDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPTAPQ
SGGGQGSGQGSGGHFRDEGDDDLYQ
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcccctggagccttagatccaaagtcggaggatctctccactgctattctgaag
cagaagactcgaccgaatcgactcatcgtggatgaagccaacaatgaggacaacagtatt
gtctgcttgtcacaggttaaaatggaggagctgcagctgtttcgtggagacactgtggtg
ctgcgcggccggaagcggaggcagacggtctgcatcgttctcacagacgacacgtgtggc
aacgagcgtgtgcgcatgaacagggtcacccgcaacaacctgcgcgtgcgtctcggggac
gtcatcagtatccacgcttgtccagatgtgaaatatgggaaacgcgtccatgttctaccc
attgatgacactattgaggggcttacaggcaacctgtttgacgtttttctcaagccgtat
ttcctggaggcctaccgacctgttcacaaagatgatattttcctggtcagaggaggcatg
agagcagtggagtttaaagtggtagaaacagaccccagcccacactgcatcgtagcccca
gacaccattatccactgtgagggagaaccaatcaaacgagaggatgaggaggagagcctg
aatgacatcgggtatgatgacattggaggttgtcgcaaacagctggctcagattaaagag
atggtggagctgcctctcaggcaccctggcctgttcaaagccattggagtgaagcctccg
agaggaatcctgctgtacggtccacccggcacgggcaagacgctggtggctcgtgctgtt
gctaatgagacgggagctttcttctttctcatcaatggtcctgaaatcatgagtaaattg
gcaggggagtctgagagcaacctgagaaaagcttttgaggaagccgaaaaaaatgcccct
gctatcatcttcatcgatgagctggatgcaatcgctccgaaacgagagaagactcatggt
gaggttgagcggaggatcgtctctcagctgctcaccctgatggacggcctgaaacaacgc
gttcatgttgttgtaatggcagccacaaacagacccaacagtgtggaccctgctcttcgg
cgttttggtcgttttgatcgagagattgacattggcatccctgattccaccggcaggctg
gaaattttacaaattcacaccaagaacatgaaactatcggatgatgttgacctggaacag
atctccactgaaacacatgggcacgtgggagcagatttggctgctctgtgttcagaggca
gcattacaggccatccgcaaaaagatgatcctaattgatctggaggatgacagcatcgat
gcagaccttcttaactcaatggctgtcaccatggatgacttcaagtgggctctaagtcag
agtaacccatcagctctgagggagacggtggcagaggttccacaggtgaactgggaggac
attggaggacttgacgaggtgaagcgagagttacaggagcttgtccagtatcctgtggag
taccctgaaaaatttctaaagtttggaatgactccatctcgaggggttctgttttatggt
cctcctggttgcggcaaaaccctactagctaaagccatcgccaatgagtgccaggccaac
tttgtgtctattaaaggcccagagctgctcaccatgtggtttggtgaatcagaggcaaat
gtcagagatgtgtttgataaggcgcggcaggcggccccatgcattctgttctttgacgag
ctggactctattgctaaagcacgaggtggaggtgctggagatgcgggaggtgcggctgac
agggtcatcaaccagatcttgacagaaatggatggaatgaccaataagaagaacgtcttt
atcattggcgccaccaacaggcctgatatcattgatcctgcaatcctgaggcctggtcgt
ttggatcaactgatttatatccctctacctgacatgctctcccgcagtgccatcctgcgc
gccaacctccgcaagtcccctatcgccaaggatgtagacctggcatatctgtcccggata
acagagggattctcaggagcagacctgactgagatctgtcagagggcatgtaagcttgct
ataagagaagctatagaagcagagatccgtgctgagagacagcgccaagccaagaaagag
gctgctatggatgatgattatgacccagtgcctgagatcaggaaggatcattttgaggaa
gccatgagatttgctcgtcggtctgtcagcgataatgacatacgcaagtatgagatgttt
gctcagactcttcagcaaagccgtggatttggaaacttcagatttcccacagcacctcag
tcaggtggaggtcaggggtcaggccaaggctctgggggtcatttcagagatgagggagat
gatgatctctatcagtaa
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