Garra rufa (doctor fish): 141336397
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Entry
141336397 CDS
T11039
Symbol
zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141336397 (zc3h13)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
141336397 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
141336397
NCBI-ProteinID:
XP_073698096
LinkDB
All DBs
Position
6:complement(27595926..27624594)
Genome browser
AA seq
1789 aa
AA seq
DB search
MSKIRRKVTVENSKTISDSSSSTTTPSRRPSVFERLGPSTASNAAETHCRNWLKTGNCSY
GNTCRYTHGTTSRGKGFSGTFNRSAERPTGDLRERMKNKRQDVDGDTQKRDTDEPTSPTT
RQRDSSRGRHREKEDIKITKERTPASEEETADWEASREDSDNGDYDYELSLEMKRQKIQR
ELMKLEQENMDKREEIVIKKEDPVPKTRTSNASKDRASPERSSSKGSPSSRKSSSPKHKA
GKGGNSSKKEKKSSTSSVISSPVSDQTRAEETESRSSKGGHGKRKGPRTPSPPPPVPVEN
PVTGKKHKNKHKNKEKCEDKPKEGKERGRDTEKHKEKKEKRRDRSDSSHKAKRSITSEER
SGSLSPPSREASPPARRRSSSPKPTSQKQSSQQRSRTPPRHRRSPSPPSRQHHSPSSRSG
SSAQRHSPSPRHRRGSISPLYRDLPPPSSSSPPPTQSSRRSRSPLTPQRDPSPTPAPRRS
SPSARHRSQGRERERGRAERERSPALQERRHERRDESRGKREKDTSRDERDYEIEQSSSR
DDRDARDGRDRRGERDRRDIREERQHRGEVKDTRDTRAGETRDRSGRESLEHRERDRERE
RERERERERERNETHRKEETTAQEERNYGRGHGREELRNDRVDNRNESRAERTGRGRGRG
SDATEKVSARGGRASQADTSSASGHDSWESRSSGLRERSSERNTDRDRYDNDRPRGEQPR
DERRGGHAERDRRDNREREQRVASPVRQQNRGEDLDREERRDDRRNDRGDDRRDDRTRER
EKDRDREREREREREKEREREKEREKEAERERERAREREREREREREREREERERERERE
REREEREREREEREKERERERKEREREREQRERERQREWDEREKGREDRRDRRDESRDDR
PARDAHEERKNIRKRHRPENTPSPRPSPKRGRDVSPADSDGYNSTEEKSEKHRLLSQVVR
PQETARSPVRSFADDKHNRWKDDDRRGDKKESRGRHEEVDSRSERGAGRGAERRIEHAPD
ISATGVSDTRRGKEQRDLPTAALTPPPPSIEDRDSLSAVHEEGKKKTKSQKKNLKKNRKE
EETAVGDRSNPEPPSSSSVAEAPQALLSPRKTAKKKALERKRKRSRGPESDVSEDELLAQ
HPLSKRRRGPRTPPPINKDDLPSQRALTAGQSSLSAKIDPNFSDWSDEDVPERGETSSAS
LPSDRPPERLLPSERPPRRGARGGGGGRDRTDPPIAPLLPDPPMLIQSLPLQPLLPQHML
RKPQQADMQQQRSSSMGSNQSRASSRRLRSPSNESAHRDEGPQGLRARRGLMQGANSRER
ERERERERERDRERERERERDRERAAASEQMGGERKSRIDQLRRGEPSRSTSSDRQDSRS
HSSRRSSPESERQARSRAGSYDSRERDRERERERDQLDREREKKDHRQMQNQQTQQRDWD
PEPREWGGRGREPLLRGNREPIRERDLRDMRERERLLPEGLLAHERMDRERGERDRERER
ERMLPFDLQAHREPKSRSETKMERGEYEPLLPREALMDVDKPADNSHLQGEASEPKMDSL
DEEEDGKGDDAQSAVSGGEEYEPISDDELDEILADSQKRDEQQDDEKISGPLDVIDVDWS
SLMPKQKQEPRTPGAALLRFTPGAVLLRAGVSRRLAGPQLLARVKEVCSRELEDPKDADK
LLEHDLGALNMAAYNRKMERANLLRSLGPCCKALCARRDIAIRRQLLKNDKGTTKQIYTS
APVVDNELVQLSLRLFKKKMASSLSSGQEKTDSASAAQQLSTPTELCVS
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaatcaggcggaaggttacagtggagaattcgaagaccatatcggacagcagc
agtagcacgaccaccccctcccgcaggcccagcgtgtttgagagactcgggcccagcacg
gccagtaatgcagcagagactcattgtagaaactggttaaagactgggaactgcagttac
ggtaacacgtgtcgatacacacatggaaccacatcacgaggaaaaggcttctctggaacg
ttcaacaggtcagccgagaggcccactggggatctccgggagaggatgaagaataagaga
caggatgtagatggtgacactcagaaaagagatacagacgagcccacttcacccacaacc
agacagcgagattcatcccgaggcagacacagagagaaagaggatattaaaatcacaaag
gaacgcactccagctagtgaagaggagaccgcagattgggaagccagtcgtgaagattcc
gataacggtgattacgattacgagttatctcttgagatgaagagacaaaagattcagcgt
gagctgatgaagctggaacaggagaacatggacaaacgagaagagattgtcatcaagaaa
gaggacccagtccctaagaccaggaccagtaatgcttctaaggacagggcctcccctgag
cgcagcagttctaaggggtcaccctcgtcccggaaatccagctcacccaaacacaaagca
gggaagggtgggaactccagcaagaaagagaagaagtcctctacttcctcagtcatctcc
tctccagtgtctgatcagaccagggcagaggagacagaaagcaggtcatctaaaggtggc
catggcaaaagaaaagggccacgaacacccagtcctcctccacctgtccctgtggagaac
ccagtgactgggaagaaacacaaaaataaacacaagaacaaggagaaatgtgaggacaag
cctaaagaaggcaaagaacgaggacgagatacggagaaacacaaagagaaaaaggaaaag
cgcagggaccgatcagatagttcccataaagccaaacgctctataacatcagaggaacgt
tctggaagtctttccccaccctcaagagaggcgtcacccccagccagaaggaggtcatcc
tcccctaaacccacttcccaaaaacagtcctcacagcagaggtctagaaccccaccccgt
caccgtcgaagcccctcccctccctcccgacagcaccactccccatcttcacggtctggc
tcctcggcccagagacactccccatctcctcgccatagaagaggttccatctctcctctt
tacagagaccttcctcctccatcctcatcctctccacctcctactcagtcttcacgacgc
tcccgctctccactcaccccacagagagacccttcaccgacacccgcccctcgcagatcc
agccccagtgcccgccaccgctcccagggcagagagagggagagggggagagcagagcga
gaaaggagtcctgcactgcaagagagacggcatgagcgaagagatgagagccgcgggaag
cgtgagaaagacaccagtcgtgatgaacgagattatgagatcgagcaaagctcttctcga
gatgaccgtgatgccagggacggccgagaccgtcgtggtgaacgggatagacgagatatc
cgggaagagcgccagcaccgtggggaggtcaaagacactagggatacccgtgcaggagaa
acgcgagaccgctcagggcgagaatccctggagcatagagagagagaccgggaacgggaa
agagaaagagagagggaaagagagcgagaacgaaatgaaacccatagaaaggaggaaaca
acagcccaggaggaaaggaattatggaagaggacatggaagggaggaattgagaaatgac
agagtggacaatagaaatgaatctcgagctgaaagaacaggcagaggaaggggccgtgga
tcagatgccacagagaaagtttctgctcgtggtggtagagcgtcacaggctgacactagc
agtgctagtgggcatgacagctgggagtcccgcagcagtggtctgagagagaggagctcg
gagagaaacactgatcgtgatcgctatgataatgatcgaccgagaggggaacagcccaga
gatgaacggcggggaggacatgcagagagagaccgccgtgacaacagagaaagagaacaa
agagtggcctctcctgtccgccagcaaaaccgtggtgaggaccttgatcgtgaagagaga
agagatgatcgaagaaatgatcgaggggatgacagacgagatgaccgcacccgtgagaga
gagaaggacagggatagagaaagagagagggaacgggaaagagaaaaggagagagagcgg
gagaaagaacgggaaaaagaggctgaaagagagcgtgaaagagccagggagagggagcgg
gagagagagagagaaagagagcgggagagggaggagagagaaagagaaagagagcgggaa
agagaaagggaggagcgggaaagggagcgagaagaacgggagaaagaaagggaacgagag
aggaaggagagggaacgggaaagggagcaaagagagagggaacggcagagggagtgggac
gagagagaaaaagggagggaagataggcgggacagaagagatgagtcgcgagatgaccgc
cccgcccgagatgcgcatgaagagagaaagaacattcgtaaaagacatcgtcctgagaac
actcccagtccacgcccatcccctaaaagagggcgagatgtgagccctgcagacagtgac
ggttataacagcactgaggaaaaaagcgaaaagcaccgattgttgagtcaagttgttcgc
cctcaagagactgcccgctcgcctgtccgctccttcgctgatgataaacacaaccgctgg
aaggacgatgaccgccgtggcgataaaaaagaaagtcgtggccgacatgaggaggtggat
tcccgcagtgagagaggagcaggaagaggagcagagcgacgtatagaacacgctccagac
atttctgctacaggcgtttctgacaccagaagggggaaagagcagagggacctccctact
gctgccctcactcctcctcccccttccatagaggacagagactctttatcagctgttcat
gaagaggggaagaaaaagactaaatctcagaagaaaaatctgaagaagaaccgaaaagag
gaggagactgcagtaggggaccgtagtaaccctgagcccccttcctcctcctctgtagct
gaagcccctcaggctctcctctcacctcgaaagacagccaagaagaaagctttagaaagg
aagcgcaagcgctccagaggtcccgagtcggatgtttcggaggatgaactgcttgcccag
catccccttagcaagaggcgacgtggcccacgtacacctccgccaatcaacaaggatgac
cttccctcccagagggctttgacagctggacagagttccctctctgctaaaatcgatccc
aacttcagtgactggtcggatgaggatgttccagagcgaggtgagacctcctctgcctcc
ctgccttccgataggcctccggagcggctgcttccctctgaacgtccccctagaagaggt
gcacgtggtggtggtggtggccgggaccgtacggaccctcccatcgcccccctgctccct
gaccctccaatgctgatacagtctcttcctttacaaccgttactgccgcaacacatgctg
cgcaaaccgcagcaagcagacatgcagcagcagcgcagcagtagcatgggcagcaaccaa
agccgtgcatcttcgagaagactgcgttcaccctccaatgagtcggcccatcgtgatgaa
ggccctcagggactcagggcccgcagaggactcatgcaaggtgccaattctcgggagaga
gagcgagagcgagagcgagagagggaacgggacagagagcgggaacgagaaagggagaga
gacagggagagggcagcggctagtgaacagatgggaggagagaggaagtcaaggattgat
cagctccggagaggagaacccagtcgaagtacttcctcagaccggcaggactcccggagt
cacagttcccgccgtagttccccagagtctgagcgtcaggctcgctccagagctggctcc
tacgacagccgcgagcgggaccgggaacgggaacgagagcgtgatcagttggatcgagag
cgtgagaaaaaggatcaccgtcagatgcaaaaccaacaaacccaacagcgagactgggac
ccagaacctcgtgagtggggtgggcggggcagagagcccctcctccgtggaaaccgtgag
ccaattagagaaagagatttgcgggacatgcgtgaaagggagcgactgttacctgaaggg
ctgctggcacatgagcgaatggatcgtgagcgtggtgaaagggaccgtgagcgtgaacgg
gaaaggatgcttccatttgaccttcaggctcacagggaacctaagagcagatctgaaact
aagatggaaaggggcgagtatgaacctctgttacccagagaagctctcatggatgtagat
aagccagcagacaactcgcacctgcaaggggaagcatctgaaccgaaaatggatagtctt
gatgaagaggaggatggaaagggggatgatgcgcagtctgctgtctctggtggtgaggag
tatgagccaatcagtgatgatgaactggacgagattctggctgacagtcaaaagagggat
gaacagcaagatgatgaaaagatttctgggcctctagatgtgattgatgtagattggtcc
agtttgatgcccaagcaaaaacaggagcccagaactcctggggcagcactgctccgattc
accccaggagctgttttgctcagagcaggagtgtccaggcgcttagctgggcctcagctc
cttgccagagttaaagaagtgtgttccagagagttggaagaccctaaagatgctgataaa
ctcttggagcatgatctgggtgctctgaacatggctgcatataacagaaaaatggagagg
gccaacctactgaggagcctgggtccttgctgcaaggcactgtgtgcccgcagagacatt
gccatacgtagacagcttctgaaaaatgacaagggcacaaccaagcagatctacaccagc
gcgccagtggtggacaatgaacttgtgcaactgagtttacgtctctttaaaaagaaaatg
gcttccagcctgtccagtggacaggagaagactgattcagcctctgccgcccagcagctc
agcacaccgacagagctgtgtgtctcctga
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integrated database retrieval system
