Garra rufa (doctor fish): 141336399
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Entry
141336399 CDS
T11039
Name
(RefSeq) POU domain, class 2, transcription factor 1-like
KO
K09364
POU domain transcription factor, class 2
Organism
grf Garra rufa (doctor fish)
Pathway
grf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
141336399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141336399
03021 Transcription machinery [BR:
grf03021
]
141336399
Transcription factors [BR:
grf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
141336399
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
141336399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
141336399
NCBI-ProteinID:
XP_073698101
LinkDB
All DBs
Position
6:complement(55528262..55547312)
Genome browser
AA seq
635 aa
AA seq
DB search
MADRGSTTQDERSTADSSGGPADLSKSSMENGAHGGAQANGLDGHKANGQAAGSISNVQA
QALLQQLSLTPAQLLLQQTQAQLLAAAVQQSAGQQSSTTGANISASAATPITLSQPIQIA
SQLQPQGLNLQQFVLVQPGHSIAPQLQPQFIISQSPQGQTGLLQAQNLLTQLPQSQANLL
PAQTSIALTTQAATPTRKIAAMPAPAAAAPKRIDAPCVEEASDLEELEQFAKNFKQRRIK
LGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENMSADCV
VSSQSEMSPGLCDSLNRRRKKRTSIETTIRLALEKSFLEQSQKPSSEEITLIADQLNMEK
EVVRVWFCNRRQKEKRINPPSSGGSPASAIKTIYSSATVSSGTNTLTVSPVVSLNSGTIT
SFTFSGGALGQVTSNAPSVISMAPALATPAPTMTTPSLSSSATAARQEAAAAQAVSTATV
TQGAGQLLVTSAGLGGANLSIAGLNPTIITPSQLTHGGALLSLAPALGNTLSPALMNNNT
LATIQALASSGAFPLTSFDGNTGLLFANTSAGNPAQSLVTTPFFLNPSSLSLLPANLLSA
GGAGGGALNLQLTGDLQQSPVAMTTKGVGVASKAQ
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaggatcaacgactcaagatgagcgctcgactgcagattccagcggcggt
ccagcagatctgagcaagagcagtatggagaacggagcacatggaggagctcaggccaac
ggtctggacggccacaaagcaaacggacaagcggcaggttcgatcagcaacgttcaggcg
caggcgctgctccagcagttgagtttgactccagcgcagctgttgttgcagcagacgcag
gcgcagctcctcgccgcagccgtgcagcagtcagcaggtcagcagagcagcaccactgga
gccaatatctccgcctccgcggccacgcccatcacgctctcccagcccattcagatcgcg
tctcagctgcagccgcagggattgaacctgcagcagttcgtgttggttcagccgggtcac
tccatcgctcctcagcttcagccgcagttcatcatatctcagtctcctcagggtcagacc
ggtctcctgcaagctcagaatctcctgactcaactacctcaaagccaagccaacctcctg
ccagcgcagaccagcatcgctctcaccacacaggcggccacaccgacgcggaagatcgcc
gctatgccggctccagcggcggccgctccgaagcgcatcgatgctccgtgtgtggaggag
gccagcgatctggaggagctcgagcagttcgccaagaacttcaagcagagacgcatcaag
ctgggcttcactcagggtgatgtggggctggcgatggggaaactctatggaaacgacttc
agtcagaccaccatctccagattcgaggccttgaacctgagcttcaagaacatgtgcaaa
ctcaaacctctgctggagaaatggctcaatgacgctgagaacatgtctgctgactgcgtg
gtgtcgagtcaaagcgaaatgtctccgggtctctgtgacagtctgaaccggcggcgtaag
aagcggaccagcatcgagaccaccatccgtctggccttagagaagagcttcctggagcag
agtcagaaaccgtcctcagaggagatcacactgatcgcggatcagctgaacatggagaag
gaggtggtgcgagtctggttctgtaaccgcagacagaaggagaagcggatcaatcctccc
agcagcggcggatcgcccgcatcggccatcaaaaccatctacagcagcgccacggtgtcc
agcggcacaaacacgttgacggtcagtcctgtggtttctctgaacagcggcaccatcact
agcttcaccttcagcggcggagctctgggtcaggtgacgtcgaacgcgccgtccgtcatc
tccatggcgcccgccctggccacgcccgctcccaccatgaccacgccctctctcagctcg
tccgccaccgccgccagacaggaagcggccgccgcgcaggcggtttccacggcgacggtc
acgcagggggcggggcagctgctggtgacgagcgcggggctgggtggagctaatctgagc
atcgcgggtttgaacccaaccatcataacgccctcgcagctgacgcacggcggggcgctg
ctgagtttggctcctgctttaggaaacaccttgagtcctgctctgatgaacaacaacaca
ctggccaccatccaggctctggcgtcgagtggagcttttcccctgacctccttcgacgga
aacaccggcctgctattcgccaacaccagcgctggaaaccccgcccaaagtctggtgacc
acgcccttcttcctcaacccgtccagcctctctctgctgccggccaatctgctgtcggcg
ggcggggccggaggcggagctctcaacctgcagctgaccggcgacctgcagcagagtccc
gtcgccatgacgaccaagggcgtgggcgtggcctcgaaggcgcagtga
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integrated database retrieval system
