Garra rufa (doctor fish): 141336404
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Entry
141336404 CDS
T11039
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141336404 (sox1b)
Transcription factors [BR:
grf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
141336404 (sox1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Peripla_BP_4
Motif
Other DBs
NCBI-GeneID:
141336404
NCBI-ProteinID:
XP_073698108
LinkDB
All DBs
Position
6:complement(14562739..14565121)
Genome browser
AA seq
340 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNTGHTGPNSGSKVNQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLAGSGGGGGVGLGMGAAGVGQRLESPVGHGGSTAASYAHMNGWTNGAYSGQVA
AAAAAAAMMQEAQLAYSQHPGSGAHHHHGHHHHPHNPQPMHRYEMTALQYSPISNSQSYM
SASPSGYGGISYTQHQNSSVASSGAIGTLSSLVKSEPSVSPPVTAHSRAPCPGDLREMIS
MYLPTAEAGDPSVQSRLHAVPQHYQSSTTGVNGTVPLTHI
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggacttgcattccccgggaccccagactaacacaaac
acgggccacacgggacccaacagcggcagcaaagttaaccaagaccgcgtcaagagaccc
atgaacgcgttcatggtgtggtctcggggtcagcggagaaaaatggctcaggagaaccca
aagatgcacaactcggagatcagcaagcgcctcggagcggagtggaaagtcatgtcagag
gcggagaagcgacccttcattgacgaggcgaaaagactgcgcgccatgcacatgaaggag
catccggattacaagtaccgaccccggaggaagaccaagaccctgctcaagaaggacaag
tactctttggcgggtggcctgcttgctggatcaggtggcggaggcggcgtggggctggga
atgggggcagcgggggtcggacagaggttagagagtccggtgggtcacggcggcagcacc
gcggcgagctacgcgcacatgaacggctggaccaacggcgcgtactcgggccaggtggcg
gccgccgcggctgcagccgcgatgatgcaggaggcgcagctcgcctacagccagcacccg
ggcagcggagcgcatcaccaccacgggcaccaccaccatccacacaatccccagcctatg
caccgctacgaaatgacggctctccagtacagccccatctcaaactctcagagctacatg
agcgcctcgccgtcaggctatgggggaatatcctacacgcaacaccaaaactccagcgtg
gcttcatctggggccatcggcacgctgagctcgctggtgaagtcggagccgagcgtaagt
cctcccgttacagctcactctcgagccccttgtcctggagacttgcgggagatgataagc
atgtatttaccgacggcggaggcaggggacccatccgttcagagcagactgcacgctgta
ccgcagcactatcaaagttccacgacgggcgtaaacggaaccgttccactgacacacata
tga
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integrated database retrieval system
