Garra rufa (doctor fish): 141336517
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Entry
141336517 CDS
T11039
Symbol
glb1
Name
(RefSeq) beta-galactosidase
KO
K12309
beta-galactosidase [EC:
3.2.1.23
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf00052
Galactose metabolism
grf00511
Other glycan degradation
grf00531
Glycosaminoglycan degradation
grf00600
Sphingolipid metabolism
grf00604
Glycosphingolipid biosynthesis - ganglio series
grf01100
Metabolic pathways
grf04142
Lysosome
Module
grf_M00079
Keratan sulfate degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00052 Galactose metabolism
141336517 (glb1)
09103 Lipid metabolism
00600 Sphingolipid metabolism
141336517 (glb1)
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
141336517 (glb1)
00604 Glycosphingolipid biosynthesis - ganglio series
141336517 (glb1)
00511 Other glycan degradation
141336517 (glb1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
141336517 (glb1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141336517 (glb1)
Enzymes [BR:
grf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.23 beta-galactosidase
141336517 (glb1)
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
141336517 (glb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_35
BetaGal_ABD_1
BetaGal_gal-bd
Glyco_hydro_42
BetaGal_ABD2
C4
Motif
Other DBs
NCBI-GeneID:
141336517
NCBI-ProteinID:
XP_073698281
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All DBs
Position
6:complement(9650159..9660100)
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AA seq
659 aa
AA seq
DB search
MAPGFGQISVLLLTLPLVTYAATPSFSIDYHQNCFLKDGEPFRYISGSIHYSRIPRVYWK
DRLLKMYMAGLNAIQTYVPWNFHEPVPGQYDFSGDRDLEHFLQLCQEIGLLVIMRPGPYI
CAEWDMGGLPSWLLKKKDIVLRSSDPDYIAAVDKWMGTLLPIINRYLYQNGGPIVTVQVE
NEYGSYFACDYNYMRHLSQLFRSYLGEEVVLFTTDGAGVGYLKCGSLQDIYATVDFGPGS
NVTAAFEAQRHAEAHGPLVNSEFYTGWLDHWGEKHSVVPTAAVVKSLNEILEVGANVNLY
MFIGGTNFGYWNGANSPYGPQPTSYDYDAALTEAGDLTEKYFAIREVIKMYKKIPEGVLP
PSTPKFAYGQVQMKKLKTVSESLDILSLSGPVKSLYPPTFTEMNQAFGFVLYQTVLPVNC
LKPTPLSSPLNGVHDRAYISIDGIAAGILERNKALTINITGKAGSRVDVLVENMGRINYG
REINDFKGLVFNLTLGADVLGNWTVYSLSIDEAVQKGLLSASSGFVSTSSRFTTSPPPAL
SPPTFYAGSFIIPDGIPDLPQDTYIQFPNWRKGQVWINGFNLGRYWPSRGPQLTLFVPAH
LLSTSVQNNITVLELEASPCSSGSCVVEFTNTPIINGTVKSTSHYKRSSADFWSRTILD
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctggtttcggacagatatcggttctcctcctgaccctaccattggtcacgtat
gccgcaacgcccagtttctccatcgattaccatcaaaactgcttccttaaagatggagag
ccctttcgctacatctccggcagtatccactacagcaggattcccagagtctactggaag
gacaggctactcaagatgtacatggctggtttgaacgccatccagacgtatgtgccatgg
aacttccacgagccggtgcctggtcagtacgacttcagcggggatcgtgatctagagcac
ttcctacagctgtgccaagaaattggcctgctggtcatcatgagaccaggcccctacatc
tgtgcagagtgggatatggggggtttgccttcctggctgttgaaaaagaaagatattgtc
ctgcggtcatctgatccagattacattgcagcagtggataagtggatggggacattgttg
cccatcataaaccgttacctgtaccagaatggaggacccatcgttactgtgcaagtagaa
aatgaatacggcagttactttgcctgtgattataattacatgcgccatctcagccagctg
ttccgctcttatctgggtgaagaggtggtcctgttcaccacagatggagcaggtgtgggt
tatctcaagtgtggatccctccaggacatctatgccaccgttgacttcggaccaggttca
aatgtgactgctgcttttgaggcacagagacatgcagaggcacatgggcctttggtgaac
tctgagttctacacaggctggttggatcactggggcgagaaacactctgtcgttcccaca
gctgctgtggtcaagagcctcaatgaaattctggaagtgggagccaatgttaacttatat
atgttcattggtggaactaactttggctattggaatggcgccaactctccttatggtcct
caaccaactagctatgactatgacgccgcgcttacagaagctggagacctcacagagaag
tatttcgccattagagaagtcatcaaaatgtacaaaaagataccagagggagtactgcct
ccatcaacacctaaatttgcctatgggcaagtgcaaatgaaaaagctcaagactgtgtca
gagtctttagatatactatctctctctggccctgtgaaatctctttacccaccaacattt
actgaaatgaatcaggcttttggctttgtgctgtatcagactgtgttacctgtcaactgt
ttgaagcccaccccgctgtcgtccccactaaatggagtccatgatcgggcatatatatcc
attgatggtattgctgctggtattttggagaggaacaaggcactcaccatcaatataaca
gggaaagctggcagccgtgtggacgtcctggtggagaacatgggcagaatcaactacggc
agagaaattaatgacttcaagggtctggtgtttaatctgactctgggtgctgatgttctg
ggtaactggacggtgtactctctgagtatagatgaagcagtgcagaagggcctgttgtcg
gcatcgagcggattcgtctccacctccagcagattcaccacctccccccctcctgctctt
tcacctccaaccttctacgctggcagcttcatcatccctgatggcattcctgacctccct
caggacacatacatccagtttcccaactggaggaagggtcaagtgtggattaacggtttt
aacttgggccgctactggccgtcccgtgggccacagctgaccctctttgtcccagcccac
ctgctcagcacctctgtccaaaacaacataactgttctggagttagaggcatcaccttgc
tcctcaggttcctgcgtggtggagttcactaatactcctatcataaacggcactgtgaag
tcaaccagccactacaagagaagttcagctgacttttggagtagaacgatattagattaa
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