Garra rufa (doctor fish): 141336546
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Entry
141336546 CDS
T11039
Symbol
rims1b
Name
(RefSeq) regulating synaptic membrane exocytosis protein 1 isoform X1
KO
K15291
regulating synaptic membrane exocytosis protein 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
141336546 (rims1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141336546 (rims1b)
Membrane trafficking [BR:
grf04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
141336546 (rims1b)
Small GTPases and associated proteins
Rab associated proteins
141336546 (rims1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RIM2a_ZnF
FYVE_2
PDZ
Motif
Other DBs
NCBI-GeneID:
141336546
NCBI-ProteinID:
XP_073698320
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All DBs
Position
6:26477656..26573240
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AA seq
1474 aa
AA seq
DB search
MSASVGPQSGPRPPTVPAPMPDMPDLSHLTEEERKVIMAVMVRQKEEEEKEQAMLKTLHQ
QFESYKEQVRKIGAETKRQQAVHKDDAPTCGICRKTKFADGCGHLCSYCQTKFCARCGGR
VSLRSNNCLIGKDRVMWVCNLCRKQQEILTKSGEWFSSGPGGRPLSVGAPLSVPELEKDR
KLRSRSQAPVNNDTLPPSAGSGDPTKGADTMPASRSRSEPPREKKRPVSLHEQNGKVIGR
GERRRGPGRLSSQASEDRAPGEKRDSRRLEKVNSQEYPDNEPNHPERRRRQEEEERERQR
REEEYQTRYRSDPNLARYPVKPQKEEQEMRMHAKVSKMRQERHHSDLAINEVGLMQDGGE
ATGNRMSRQRVANNEDRKSLLENHRAYSVDRTVGGGIGGQGSLNKQGHGGPQVGPPGPPD
LRDGQDWGPKGHLEPGSAAFLHRAKREKAAEIMRKDSSLSSDQSESLRPPPPRAYRPKRG
LNKRQMSISSSEEEGGSTPEYTSCEDVEIESVSEKGDWDCHPLDPAVWHHPVSWQPSKEG
DHLIGRITLSKRSTMPREAGSLLGLKVVGGKMTESGRLGAFITKVKKGSLADIVGHLRAG
DEVLQWNGKALPGATKKEVYNIILESQSAPQVEIVVSRPIGDTPRLPGTSHPPLESTGSS
SIDESQKMDRPSISVMSPTSPGMLRDIPLVLPGQLSVKLWYDKVGHQLIVNVLQARELPP
RPDGRPRNPYVKMYFLPDRSDKSKRRTKTVKKIAEPKWNQTFLYSHVHRRDFRERMLEIT
VWDQPRVQEEESEFLGEILIELETALLDDQPHWYKLQTHDVSSLPLPQPSPCLPRRHVHG
DSPSKKLQRSHRIIETDYDDGITVVSSAAERNSRDRERSSTLTVPERQAAIQHRSRSVSP
HREDQCRARSRPAHVPMQRSLDEIHKNRNHSYSPNRYHDSHQEHRSGDSDYEYSEDSEVL
EMHRSIRGGSAECLHTNSDLQPSLDRVRSASTTCLRPESNFHSPERESHFPSHRHSGNLD
RPSCQIANKKIIDGDREFQHGGHYSPAGTTSLGRRGRQLPQLPAKSSSIEQALAVEERAR
QLQMRVHSYRPGSSASSGHDPEAELKNRRDMYKDQRRSCDNMSARSSDSDMSDVSAISRA
SSASRLSATSYMSIQSERPHGRISRQVRASSGRSMLKSTSVSGDINTSERTDGSQSDTAL
GTVGTGAKKRRSSLNARFVAIVGNRRSRSTSQISQTEASNKKSKGSQGTIQRSQETGMAV
ELQRNMSRQPSRESNNGSMNSYNSEGSPIFPAVRVETQFSDFLDGLGPAQLVGRQTLATP
AIGDIQIGMVNKKGQLEVEVIRARGLIQKPGSKSLPAPYVKVYLLHNGAYVAKKKTKIAR
KTLDPLYQQTLQFEESPQGKVLQVIVWGDYGRMDHKSFMGVAQILLEELDLSSNVIGWYK
LFPPSSLVDPTLASLTRRASQSSLDGSAPAGVRS
NT seq
4425 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctcggtagggccccaaagcggccctcgcccacccaccgtgccggctcccatg
cctgatatgccggacttgagtcatctcacggaggaggaaaggaaagtcatcatggcagtg
atggttcggcaaaaggaggaagaggagaaggaacaagccatgctaaagacactgcaccag
cagtttgagagttataaggagcaggtgaggaagattggggcagaaacgaaacgacagcag
gctgtccataaagatgatgcacctacctgtggcatctgccgtaagaccaagtttgcagat
ggctgtgggcatctgtgttcctactgccagaccaagttctgcgcccgctgtgggggaaga
gtgtcgctgcgctcgaataactgtctcatagggaaagacagggtgatgtgggtatgtaac
ctgtgcaggaaacagcaggaaatcctaactaaatcaggagaatggttttcatcagggcct
ggggggaggcctcttagtgtgggcgctcccctcagtgtccctgagttggagaaggacagg
aagttgcgctccagatcacaggctccggtcaataacgacactctgccacccagcgctggt
tctggtgatcctaccaagggagcagatacgatgcccgcctcacgctcccgcagtgaaccg
ccacgagaaaagaagagacccgtgtccctgcacgagcaaaatggaaaggtgattggacgt
ggagagagaaggcgaggcccaggccggttgtcatcacaagcctctgaagaccgagctcca
ggtgaaaagcgtgacagcagacgactggagaaagttaactcacaggaatatccagataat
gaacccaatcatcccgagcggcgaaggagacaggaagaggaagagcgagagcgtcaaaga
cgagaggaggagtaccagactcggtaccgcagtgacccgaacctcgcccgctaccctgtt
aaaccgcagaaggaggaacaggaaatgcgcatgcatgccaaagtgtccaaaatgcgtcag
gagcgtcatcacagcgacctagccatcaacgaagttggattaatgcaagacggaggcgag
gcgactggaaatcgcatgagcaggcaacgagtggctaacaacgaagaccgcaagtccctt
ttagaaaaccatcgcgcttattctgtggacaggaccgtggggggtggcattgggggacaa
ggatcactcaataaacagggccacggtggccctcaagtgggccctcctgggcccccagac
ctcagggacggacaggactggggcccaaaggggcatctggaacctgggtccgcagctttt
ctgcacagggctaagcgggaaaaggctgcagaaatcatgcgtaaggattcttctcttagc
tcggaccaatctgagtcgttacggccacctccacctagagcctatagacccaaacgaggc
ctcaacaaaaggcagatgtccatcagtagctcggaagaagagggcggctccacgcctgaa
tacaccagctgtgaggatgtggagatcgaaagtgttagtgaaaaaggtgactgggactgt
catcctctggacccagctgtgtggcatcatccagtaagctggcagccatccaaagaggga
gatcatttgattggccgcatcactctaagtaagcgctccaccatgccacgggaagccggt
tccctactgggtctgaaggtggttggtgggaaaatgacagagtcagggagactgggggcc
tttatcaccaaagtaaagaaaggaagtttggctgacattgtaggccatttacgagcaggc
gatgaggtgttgcagtggaatggaaaggcgttgcctggagcaactaaaaaggaagtgtac
aatattattctggagtcccagtcagcacctcaagtggaaatagttgtttccagaccaatt
ggagatacaccaagacttccagggacatcacatcctcctctagaatcaactggttcgagt
tctatagatgaatcccaaaagatggatcgtccatccatctctgtaatgtcaccgactagt
cctgggatgttgagagacatccctctggtactgccaggccagctgtcggtgaaattatgg
tacgataaagtgggccatcagcttattgtcaatgtcctacaagcacgagaactgccccct
cgaccagacggacgacccagaaatccctacgtcaaaatgtattttcttcctgatagaagt
gacaagagcaagagacggacgaaaacggtgaagaagattgcagagccaaagtggaaccag
acattcctgtattctcacgtccaccgcagagacttcagagagcggatgctggagatcact
gtttgggaccaacccagagtccaggaggaagagagtgaatttctgggagagattctgatt
gagctggaaacagctctattggatgaccagccacattggtacaaattgcagacccatgat
gtgtcgtccctaccattgccccagccgtccccctgcctccctcgcagacatgttcacgga
gacagtcctagtaaaaaactgcaaagatctcatcgcatcattgaaacagattatgatgat
ggtataacggtagtgtcctcagcagcagagaggaactccagagacagggagaggtcaagc
acgctgaccgtacctgagagacaggcggccatacagcatcgctcgcggtcagtatcccca
catagagaagaccaatgcagagcccgctcacgacctgcacacgtccctatgcagaggagt
ctggatgagatccacaaaaaccgcaatcattcctactctcccaatcgctaccatgactcc
caccaggaacatcgctccggagattctgactatgaatattcagaggacagcgaggtcctg
gagatgcacagatcaatccgaggtgggagtgctgagtgcctgcatacaaacagtgatctt
cagccttcattagatagagtaagaagtgccagtacgacttgtttgagaccagagtcaaac
ttccactcacctgaaagagaaagtcattttccatctcacaggcattctggcaatttggat
aggccaagctgtcagatagctaacaagaaaatcattgatggcgacagagaatttcagcac
ggcggacattattccccggcagggaccacgtcattagggcgcaggggtagacagctgcca
caactccctgcaaagagcagcagtatagagcaagcactagcagtagaagagcgggctcgt
cagttgcaaatgagagtacattcctatcggccaggttcttctgcaagctctggtcacgac
ccagaggcagagctcaaaaacaggagagatatgtataaggaccagaggaggagttgtgat
aacatgtctgcgaggtcatcagacagtgacatgagcgatgtatcagccatctcccgtgcc
agcagtgcctcacggctgagtgccaccagctacatgtccattcagtctgagagaccacat
gggagaatcagtcgtcaagtcagagcctcatctggtcgaagtatgctaaagagcacaagt
gtaagcggtgacatcaacacgtcggagcgaacagacggtagccagtctgacactgccctg
ggaacagtcggaaccggagcgaaaaagcgccgctccagtcttaatgctcgatttgtggct
atcgtgggaaaccgtcgcagccgaagcacctcacagatcagtcaaacggaggcatccaat
aaaaagtcaaagggcagtcaagggacgatccaacgcagtcaggagacgggaatggcagtg
gaattgcaaaggaatatgagtcgccaacccagccgtgaatctaacaacggaagcatgaac
agctacaactcagagggcagtccaatcttcccagcggttcgagtcgagactcagttcagt
gatttcctggatggactgggccctgctcaactagttggtcgacaaacccttgccacacct
gcgattggtgacattcagattggcatggtgaataagaaaggccagctggaggtggaggtg
ataagagcacggggtctcatccaaaaaccagggtccaaatcactccccgctccatatgtc
aaagtctatcttctacacaatggggcgtatgtagctaagaagaagacaaaaattgcacgc
aagacactcgacccgctgtaccagcaaacgctgcagtttgaagaaagtccacagggtaaa
gtgttacaagtaattgtctggggagattatgggcgaatggaccacaaatccttcatggga
gttgcacaaatcctactagaggagctggacctctccagcaatgtgattggctggtacaaa
cttttcccgccttcttccctagtcgatccaactcttgcctctctaactcgacgtgcttct
cagtcatccctggacggttcggcacctgcgggggttcgatcgtag
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