Garra rufa (doctor fish): 141336560
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Entry
141336560 CDS
T11039
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141336560 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141336560 (fip1l1b)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141336560 (fip1l1b)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
141336560
NCBI-ProteinID:
XP_073698341
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Position
6:complement(42368005..42379570)
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AA seq
561 aa
AA seq
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MSAEEADKTTTTDANAGDEEEEWLYGDEGESKETEEEEAKLTAAISATSAPPDTEEVTET
TNSTTTTTTTTTTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYTAY
GGTPVNLNIKSAGSRAYGAGSKVKGIDLEAPGSINGVPVLEADMENFEEKPWRKPGADLS
DYFNYGFNEDTWKAYCEKQKRLRMGLDILNIGSTTSKISVQQGRTGNSEKEITVASHAAK
ADFTSPPNLYKAALNPARISPPHWPGPATQEMSYYTKTPGTIDVIGGQTATISRVEGRRR
HNLEGNNIQVISEHSTSDAEPAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIPPPRM
PITVPPPNFPPPTGGPPPSLIPTMENSGHPGGYDGRPVAPYPFPTGGFPPPMQGAVNPWP
GLMDNPKQWDYYPRREKEREKERERERPRERGHERDHSPSAVVYNSDEERYRSYRDYGDR
GYERHRERSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKKSKRS
KEGKEPSEERSADQENQEAME
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaggaggcggataaaaccaccaccactgatgcgaatgcaggagacgaagag
gaggaatggctgtacggagatgaaggtgaaagtaaagaaactgaagaagaggaggccaaa
ctgacagcagccatcagtgcgacctctgctcctcctgatacagaggaggtcacagagacc
acaaacagcaccaccactaccaccaccaccaccaccaccactactggaaatggtgtggcg
agtcaggaggaagcacctggagaagatgaagacagtgaaagcgatagtgatgacgacgat
gacgatgtccgcgtcaccattggggatattaaaaccggagcaccacagtatacggcatat
gggggaactccagtgaatctgaacataaagtcagctggcagcagagcgtatggagcaggt
agcaaagtgaagggcatagacctcgaagctccaggcagcatcaatggagttccagtcctg
gaagcggacatggagaactttgaggagaaaccatggagaaagccaggtgcggacttgtct
gactattttaactatggttttaatgaggacacgtggaaagcatactgtgaaaagcagaag
aggttacgcatgggccttgacattctcaacattggatccaccaccagcaagatctcagtt
cagcagggacgcacaggtaacagtgaaaaggagatcacagttgcatctcatgctgctaaa
gcagactttacctctccacctaacctgtataaagcagctctcaacccagcgaggatatcc
cctccacactggccagggcctgccactcaagaaatgtcctattatacgaagacgcccggg
accatagatgtaattggtggacagactgccaccattagcagagtggaaggacgacgtcgc
cacaatctggagggaaataacatccaggtgatctcagaacattcgacctctgatgctgaa
cccgcaaagatgccgcctcctttctttccccctggaccactgcctccaaacatcccacct
cctcctttcctccctcctcctgtcagtcaggctcctcctctaatcccacctccacggatg
cccatcactgttcctccacccaattttccccctcccactggaggacctcctccttcactt
atccctactatggaaaacagtgggcacccaggaggatatgacggacgtcccgttgctcca
tacccttttcctacaggtgggtttcctccacccatgcaaggagctgttaacccctggcct
ggtttgatggacaacccaaagcagtgggactactaccctcggcgagaaaaagagagggaa
aaagagcgagagagagagaggccgagggaaaggggccatgagagagaccatagtccctcc
gctgtggtttataacagtgatgaagaacggtatcgctcttatcgtgactacggagacaga
gggtacgagaggcatcgggagcgatcaagccgtgagaaggaggagcgtcacagggagagg
agacacagagagaaagaggaagggaggcacaagtcatcacggagcagtagcagacggaga
catgacagcgaggagggtgacagtcaccggcgccacaagcacaagaagtccaagaggagc
aaagagggcaaagagcccagcgaggagcgttctgctgaccaggagaaccaggaggccatg
gagtaa
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