Garra rufa (doctor fish): 141336716
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Entry
141336716 CDS
T11039
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
grf Garra rufa (doctor fish)
Pathway
grf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
141336716 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141336716 (taf5)
03036 Chromosome and associated proteins [BR:
grf03036
]
141336716 (taf5)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
141336716 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
141336716 (taf5)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
141336716 (taf5)
STAGA complex
141336716 (taf5)
TFTC complex
141336716 (taf5)
SAGA complex
141336716 (taf5)
SLIK complex
141336716 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF12
WD_LRWD1
WD40_like
VPS8_N
LisH_TPL
PROPPIN
LisH_PAC1
Motif
Other DBs
NCBI-GeneID:
141336716
NCBI-ProteinID:
XP_073698538
LinkDB
All DBs
Position
6:complement(11757745..11767255)
Genome browser
AA seq
744 aa
AA seq
DB search
MAAVQDGPMELDAEKETKPEILSDGTSNLSGNTASGTLSSSPITAAPAGAAPKMEDQQTL
IAVLQFLKRNKLTESVDILRREAGLEDQEDLQALDGSGGGKAEGDGGEANSLLSRVSMAS
AAAPQSTLTPMPTKRAEDHPDVSVVLSAYSQQGDPSLYKVYYSGLKSFIESVLDCHRAEL
SQLFYPLFVHMYLELVYNNNENEAKAFFDKFSGDQECYYQDDLRVLCGLSKKEHLKGNEA
LLDFRTSRFVLRISRDSYQLLKRHLQERHNNQIWNIIQEHLYIDIFDGMPRSKGQIDSMS
GSLAGEARREVNKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKTKKDNMGSKSKK
QDPNAPQQNRIPLPELKDSDKLDKIMYLKESTKRIRLGPENLPSICFYTFLNAYQGLTAV
DFTDDSSLLAGGFSDSTVRVWSVTPKKLRKVKSAAELNLIDKESDDVLERIMDEKTASES
KILYGHSGPVYGVSFSPDRNYLLSSSEDSTIRLWSLQTFTCLVGYKGHNYPVWDTQFSPF
GYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSTDRTVRLWDV
LNGNCVRIFTGHKGPIHCLAFSPNGKFLASGSTDGRVLLWDIGHGLMIGELKGHTDTIYA
LKFSRDGEILASGSMDNTVRLWDSLKAFDDVETDDFTAATGHIHLPDNSHELLLGTYHSK
STPVTHLHFTRRNLLLATGAYNSQ
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggaccgatggagctggacgcagagaaagaaacaaagccagaa
attctcagcgatgggacgtcaaacctctcggggaacacagccagcgggaccctgtcctca
tcgcccatcaccgctgcccccgccggcgcggctccgaagatggaggaccagcaaactttg
atcgcagttctgcagtttctaaagcggaataaactgacggagtcggtggatatcttgcgg
cgggaagccggtctcgaagaccaggaggatttacaggctctcgatggcagcggaggaggg
aaagctgaaggggatggaggggaggcaaactctctgctcagccgggtatccatggcatca
gcagccgccccccaaagcacattgactcccatgccaactaagagagcggaggaccatcca
gatgttagtgtggtcttgtcagcgtacagccagcagggggacccatccctgtataaagtg
tactacagcggcctgaagagcttcatagagtccgttctggactgtcaccgagcggagctg
tcccagctcttctaccctctgttcgttcacatgtacctggagctggtctacaacaacaat
gagaatgaagcaaaggctttctttgataagtttagcggtgatcaggagtgttactatcag
gatgacctgcgtgttctctgtggcctcagtaagaaagagcacctgaaggggaacgaggcg
ctgctggactttcgcaccagccgattcgtgctgcgcatctccagagactcgtaccagctg
ctgaagagacacttgcaggaaaggcataataaccagatatggaacatcattcaagagcac
ttgtacattgacatctttgacggtatgcctcgcagcaagggccagatcgacagcatgtcc
ggcagtcttgcgggagaggccagacgagaagttaataaagccaaggtattctacgggctg
ctaaaggagccagagatcgaggtcccgttagatgatgaagatgaggaagcagagaatgag
gaagggaagccaaagaagaagaaaacaaaaaaggacaatatgggctccaagagtaagaaa
caagaccccaacgctcctcaacagaacaggatccctctgccggagctgaaagactcggac
aaactggataagatcatgtacttgaaggagagcaccaaaagaatccggctcggcccagag
aacctgccttccatttgcttctatacgttcctcaacgcctaccagggtttgacagcggta
gacttcacagacgactccagtctgttagcgggagggttttcagactccacggtccgagta
tggagcgtcacacccaaaaaattacgaaaagtcaaatctgcagcagagctgaatttgatt
gataaagagtctgatgatgttctggagagaatcatggatgagaagacggccagtgagtca
aagatcctctacggtcacagcgggcctgtatatggtgtcagcttcagtccagacaggaac
tatctgttgtccagttctgaggacagtacaatcagactgtggagcttgcagacgtttaca
tgtctcgtggggtataaaggacacaactatccagtgtgggacactcagttctcacccttc
ggttattactttgtgtctggaggacacgacagagtagcacgtctttgggcgacagatcat
taccagcccttgcggatatttgctgggcatctagctgacgtgacctgcacgcgattccac
cccaactctaactatgtggccacaggctcgactgaccgcactgtacgcctctgggatgtc
ctgaatggaaactgtgtccgcattttcacaggtcacaaggggcccatccattgtttagca
ttctcaccaaacggaaagttcctggcatctggatccacagacgggagagttttactatgg
gatattggacatgggctgatgatcggagagctgaagggtcacacagacacaatttatgcc
ctcaagttcagcagagacggagaaatcctcgcatcaggctctatggataacaccgttcgg
ctgtgggactcattgaaggctttcgatgacgtggagacagacgacttcaccgcagcgact
ggccacattcacctgcccgataattcgcatgaactgctgctcgggacgtaccacagcaaa
tccacacccgtcacccatctgcacttcaccagacgcaacctactactggccacaggcgca
tacaactcccagtga
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integrated database retrieval system
