Garra rufa (doctor fish): 141336889
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Entry
141336889 CDS
T11039
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141336889 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141336889 (ddx5)
03009 Ribosome biogenesis [BR:
grf03009
]
141336889 (ddx5)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141336889 (ddx5)
Spliceosome [BR:
grf03041
]
Complex A
U1 snRNP components
U1 related factors
141336889 (ddx5)
Complex B
141336889 (ddx5)
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
Pre-60S particles
Helicases
141336889 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
141336889
NCBI-ProteinID:
XP_073698712
LinkDB
All DBs
Position
1:complement(52636223..52642624)
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AA seq
612 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRNGPPPGKKFGNPGERLRKKHWNMDELPKFEKNFY
QEHPEVSRRSTQDVEHYRRTKEITVKARDSPKPIMKFHEANFPNYVMDVITKQNWTDPTP
IQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDRHSGGRRDFNSYSQDNRNSDSYGQKKVFGNKTQNGSSGYNSNA
GSSFNGGYSNNGQGNFGNQSGGYGNQGYQNQQFAPNQGAVQNGMNHPPPFPFNPQQMPQS
MPFPMAPPAFPQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggtcgtgacagagggtacagcagtggtccccca
cgttttggaggcagccgaaatggacctcctccaggaaagaagtttgggaatcctggtgag
cgcctgcggaaaaagcactggaacatggatgagctccccaagtttgagaagaacttctac
caggaacaccctgaagtttctcggaggtcaactcaagacgttgaacactacaggagaacc
aaggagatcacagtgaaggctcgagactctcccaaacccattatgaagttccatgaagct
aactttccaaattacgtgatggatgtgatcactaaacagaactggactgatccaactccc
atccaagctcaggggtggccagttgcactgagtggaaaggatatggttggcattgcacag
actggctctggaaaaactctctcgtatttgcttcctgctattgttcacataaaccaccaa
ccattcctggagcgtggtgacggtcccatttgcttggtcttggctcccacccgtgaattg
gcacagcaagtccagcaggtggcggcagagtacggcaaagcttctcgtcttaagtccacc
tgcatatacggaggtgctcccaaaggaccacagatcagggacctggaaaggggtgttgag
atttgtatcgccacacctggaaggcttattgatttccttgaagctgggaagacaaatctg
cgcagatgcacctatcttgtgcttgatgaagccgacaggatgcttgacatgggatttgaa
cctcagattcgcaaaatcgtggaccaaattagaccagaccgacagactcttatgtggagt
gctacatggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgtacag
atcaacgttggtgctctgcagctcagcgccaaccacaacatcctacagattgtcgacgtt
tgcaacgacggcgaaaaggaagacaaactgatgcgtctattggaggaaatcatgagcgag
aaggagaacaagaccattatttttgtagagaccaaaaggcggtgtgacgatcttaccagg
aggatgcgcagggatgggtggccagcgatgggcatccatggagacaagagccagcaggaa
agagattgggtgcttaatgagttcaaatacggcaaagcgccaatcctcatcgccacagat
gtcgcttccagaggactagatgtggaggacgtcaaatttgtcattaactatgactacccc
aacaattcagaggactacattcaccgcattggccgtacagctcgcagtcagaaaaccggc
actgcctacactttctttacaccaaacaacatgaaacaggctcacgacctcgtctcggtc
ctccgcgaggccaatcaagccataaaccccaagctcatccaaatggccgaagacagagga
ggtcgttcaaggggaggtcgaggtggagggtatagggacgacaggcgggatcgccattct
ggtggcaggcgggacttcaacagctacagccaggacaaccgcaacagtgactcatacggg
caaaagaaggtgtttgggaacaaaactcaaaacggatctagcggttacaacagcaacgcc
ggtagcagcttcaacgggggctacagcaataatggacagggtaacttcggcaatcagtct
ggtgggtatggaaaccaaggctatcagaaccagcagtttgctcccaaccaaggggctgtc
cagaacggcatgaaccaccctcccccattcccctttaacccccaacagatgccacagtcc
atgccgttccccatggcccctccagcgttccctcagtaa
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