Garra rufa (doctor fish): 141337009
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Entry
141337009 CDS
T11039
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141337009 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141337009 (patl1)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141337009 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
141337009 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
141337009
NCBI-ProteinID:
XP_073698834
LinkDB
All DBs
Position
6:9353207..9367302
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AA seq
768 aa
AA seq
DB search
MFHFQSFDDDCTLEEEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDERVRDGP
AGTGDTSSVDLPLASGNAHSSALPKPSPSSRLYPDIDERGGGDLAESLTRLILGSDPAIA
GVGTARSERSRLPPMLSGQPPQPSALAGQSLLLSYQQHQQILHRGSTPLSQINSHSIWEN
SMSFSPVSSGLVTQKEDKTLMSIIKEVGLPNRPPTLSREEGRDLSERVPPPRSSSPVIGS
PPVRAIPIGTPPKQPMSHIHNQLQQNNHPSAIHVRASVPLRYPPPFPERLSPNNLLSIAS
SPLSHPPFPPGVGPVMSQIQRAQLLNSQVGQFQRGPAPPLLQGGVGGYRPFFGQSGPRMG
PLGPPLGHAPIRHNTTHLHPQHRRMLNQRMQNRGSSDHVGGRGMGDRKNRDPYSNLMTQR
EKEWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDNRKEHTTKLITPQVAKLEH
TYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYS
LLLEVQDFEKKFLQTPEHQRDALLEQHKTHTLQLYNSIREKEWDDRVSDEQCLMIMSVRK
GKRLISRLLPFLPQPQAAAVVMGIARNLPALAKKDKQDQVLCWLVEPVTAVIQSMSSTSL
TDLLQELQGSEGQLPLVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVT
RELLKVPSSALSSPLFTPPNLVSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgttccattttcagtcttttgacgatgactgcaccctggaggaggaagggttggtagag
gaagaagatgaaattgaccagttcaatgatgacactttcggtgcaggggcaatcgatgat
gactggcaggaggagcacgcccgcctcgcagagctcgatgaacgggtacgagacgggccg
gctggaacgggcgacacctcctccgttgacctccctctcgccagtggcaatgcccactct
tctgccctccccaaaccctccccttcctcccggctttaccctgacatagatgaacggggt
ggcggtgacctggcagagtcactgactcgcctcatcttgggctcagatcctgctattgct
ggagtgggcacagccaggtcagaaagatctcgccttcctccgatgctgtccggtcagcct
cctcagccctcggcattagctggacagtctctgctgctgagctaccaacaacatcagcag
atcctgcacagagggtcgacccctctttcacagataaattctcatagtatttgggagaac
agtatgagcttcagtcctgttagttctggactcgtcactcaaaaagaggacaaaacgctt
atgtccattattaaagaggtcgggcttccgaatcggcctcccacactcagcagagaagaa
gggcgagatttgtccgaaagggttccgcctcctcgctccagctcacctgtgattggaagt
ccacctgtgagggctatacctattggaacacctccgaaacagcctatgagccacatacac
aatcagcttcagcagaataatcacccatcagccattcacgtgagagcctctgtgccgcta
cgctacccacctcccttccctgagcgtctgtcccccaacaacctcctcagcatcgctagc
tcaccgttgtctcatcctccgttccctcctggtgttggtcctgttatgtctcagatacag
agagcccaactgctaaactctcaggttggtcagttccagcgtggtccagctcctccatta
ttacagggaggtgttggaggttacaggccgttctttgggcagtctgggcccagaatgggt
ccccttgggccgcctcttggccacgcacccatccgacacaacactacccaccttcatccg
cagcatcgcaggatgctcaaccagaggatgcagaacagaggttcgagtgatcatgtcggc
gggagaggtatgggagacaggaaaaacagagatccctacagcaatctgatgacacaaaga
gagaaggaatgggtggcgagaatacaaatgatgcagcttcaaagcaccgatccgtatctg
gatgactactattaccagaattattatgagaagatggagaagcgtcaggagcgggacaga
gacaacaggaaggagcacaccaccaagctcatcactcctcaggtggccaaactggagcac
acctatcgaccagtgcagtttgccggctcgttaggaaaactcactgtctccagtgtgaac
aatccaagaaaaatgatcgatgctgtggtgaccactcgcagtgatgacgaggaaaaaaga
gaaaagcaagtgtggaacaaaagacggcaaatcctttacactgtggagaagatgtacagt
ctactactagaagtgcaagattttgagaagaagttcttgcagacccctgagcaccaaaga
gatgccctactagaacagcataaaacccacacgctgcagctctacaactccatccgagaa
aaagagtgggacgaccgagtgagcgatgagcagtgcttgatgatcatgtctgtgcgcaag
gggaaacgcctcatctccagactcctccccttcctgccacagccccaggctgctgctgtt
gttatgggaatagctaggaaccttccagccctggccaagaaagacaaacaagatcaggta
ctgtgttggttggtagagccagtgacggcagtaatccagtccatgtccagtacctccctc
actgacctcctccaggagctgcagggcagtgaaggacagcttccccttgtgctgcaaaat
aagtttggcgtgacgttgctctatctgattctgagtgaaggagagaggatgcagagctct
gatcccaactgtcagcttatggatgataaccgctggactgagttggtgttctctgtgacg
cgggagcttttgaaggtcccgtcctctgcgctctcatctccgctgttcactcccccaaac
ctagtgtcactgttctctcgatatgtggaccggcagagactcgaactcttgcaggagaag
ctacagatcacagccctgtccaggtag
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