Garra rufa (doctor fish): 141337124
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Entry
141337124 CDS
T11039
Symbol
ssrp1b
Name
(RefSeq) FACT complex subunit SSRP1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141337124 (ssrp1b)
03036 Chromosome and associated proteins [BR:
grf03036
]
141337124 (ssrp1b)
Transcription factors [BR:
grf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
141337124 (ssrp1b)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
141337124 (ssrp1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
HMG_box
POB3_N
SSRP1_C
HMG_box_2
HMG_WDHD1
FERM_C1_MyoVII
Motif
Other DBs
NCBI-GeneID:
141337124
NCBI-ProteinID:
XP_073698986
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All DBs
Position
6:18090739..18107961
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AA seq
701 aa
AA seq
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MNDTLEFNEIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDSIPVPELTQAQWRRVCLGH
GIKLWTSTGNIYKYDGFKDTDLEKISEYFKVNYKVELIEKDMCVKGWNWGTAKFNGPLLS
FEVNDSPAFEVPLASVSQCATGKNEVTVEFHQNDDTEVSLMEVRFYVPPATGDEGSDPVE
AFAQNILSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEDINLTLNMNEDEVERRFE
GKLHKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEIACVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN
AKKLSIKNRGFKEGMKGNDNMYSDSDDDQHDAYLERMKEEGKIREEANDSDDSEGESDES
FNPGEEDDDIAEEYDSKASASESSAEDGDSDADRKKKPAKKAKFVKERKPRKKEKKVKDS
SAPKRPMSAYMLWLNASRDRIKSENPGISITEISKKAGEMWKQLGKDKKEEWEGKAEEAK
KDYDRAMREYKESGGGSSGSSKKEKKKKGGKNEEKKKRKSGGREKEKERPTGNDSFKSRE
FISSEESSSESDKGKGRKRKGSDDEEEAVSTPPSSEESGSD
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacactctggaattcaatgaaatttatcaggaggtcaagggctcctggaatgat
gggcgccttcgcttcagtaagcagacagtggtgtataaaaacagtaagactgggaaggtg
gacagcatccctgtgcccgaacttactcaagcacagtggaggagagtctgtctgggtcac
ggcatcaaattgtggaccagcactggaaacatctacaaatatgatggcttcaaagacact
gaccttgagaagatctcagagtacttcaaagtgaattacaaagtggagctgattgagaaa
gatatgtgtgtgaagggctggaattggggcactgctaaatttaatgggccattgctttca
tttgaggtgaatgacagtcctgcatttgaagttccactcgccagtgtatcccagtgtgca
acaggaaagaatgaggtcactgtggagtttcatcagaatgatgacacagaagtttccctc
atggaggtgcgcttctacgtcccacccgccacaggagatgagggttcagaccctgtggag
gcatttgctcagaacattctgtcaaaggcagatgtcatccaggctacaggagatgctgtg
tgtatcttcagagagttgcagtgcctcacacctaggggcaggtacgatatccgtatttat
ccgacattcctccatctgcatggtaagacgtttgactacaagattccatacaccacagtg
ctccgccttttcctgttgcctcataaggaccagcggcagatgttctttgtgatcagtctg
gacccgcccattaaacaaggtcaaacccgctatcattttctcattcttctgttttccaag
gaagaggatatcaacctcactctcaacatgaacgaggatgaggtggagagacgttttgag
gggaaacttcacaaaaacatgtctggctctctctatgagatggtcagcagagtcatgaag
gccctcgtcaacaggaagatcacagtgcctggaaatttccaaggtcactcaggtgcgcag
tgtataacatgttcatataaggccagttcagggctgttgtatcccctggaaagaggtttc
atctacgtacacaagcccccagtgcacctgcgctttgaggaaatcgcctgtgtgaacttt
gctcgtggaaccaccaccacccgctcctttgatttcgagatcgagaccaagcagggaaat
caatacaccttcagcagcatcgagagagaggaatatggaaagctttttgactttgtcaat
gctaagaagttaagcatcaagaacagaggcttcaaagagggcatgaaaggtaatgataac
atgtacagtgactcagatgacgaccagcatgatgcataccttgagcgcatgaaagaagag
ggcaagatccgcgaggaggccaatgacagtgacgactcagagggcgagagtgatgagtct
tttaatcctggagaagaagatgatgacattgcagaggagtatgacagtaaagcctctgcc
agtgaaagcagcgctgaagatggagacagtgatgccgatcggaagaagaaaccagccaag
aaagctaaatttgtaaaagaaagaaaaccacgaaagaaagagaaaaaggtaaaggacagc
agtgcccctaagaggccaatgagtgcctacatgctttggctgaatgctagtagagaccgc
attaaatcagagaaccctggcatctctatcacagaaatttccaaaaaggctggagaaatg
tggaaacaacttggcaaagacaagaaagaggagtgggaaggaaaagcagaggaagccaag
aaagattatgatcgagcgatgagagagtacaaggagagtggaggaggctcctcaggcagc
tcgaaaaaggagaagaagaagaaaggagggaagaatgaagaaaagaagaaaagaaagtca
ggtggtagagaaaaagagaaggagcgaccaacgggcaacgacagctttaagagtcgagag
ttcatatccagtgaggagagctcatcagagtcagacaaaggcaagggacggaagcgcaag
ggctctgatgatgaagaggaagcagtcagcacaccacccagctctgaagagtctggctca
gactaa
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