Garra rufa (doctor fish): 141337128
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Entry
141337128 CDS
T11039
Symbol
poll
Name
(RefSeq) DNA polymerase lambda
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03410
Base excision repair
grf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
141337128 (poll)
03450 Non-homologous end-joining
141337128 (poll)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141337128 (poll)
Enzymes [BR:
grf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
141337128 (poll)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
141337128 (poll)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
141337128 (poll)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
BRCT
BRCT_2
LIG3_BRCT
PTCB-BRCT
RTT107_BRCT_5
HHH
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
141337128
NCBI-ProteinID:
XP_073698991
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Position
6:complement(26374176..26388745)
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AA seq
563 aa
AA seq
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MEGHGILKAFPKVKRPRPNDQKDAPALKKTPAEPITGTVFQGVTIYIIPTGIGKARCDIF
HRQITQNGGQVVSTFSPSCTHVVVDDSVDCKRALRLLKVERLPSAVHLVKCPWLSACISE
KSLLDPEDYSLLPPESPIVAPAEKSNEISISPVPDVAATAAQDPLKVLENQENPQETLTE
TVPEIQEEHHEEDGVSQNDLEALISGVHPSESNPSQSLAENPVLSGKWVCSQPSTTKGEN
HNKHITDKLEPLAKAYTHTGDKWRALGYSKAINALKSYHKPITSYEEACKIPGIGKRMAD
KIMEIMESGHLRKLDHIGEEVPVLEMFTNIWGAGAKTAQMWYQQGFRTLEDIRTKAVLNH
TLRIGLKHYDDLLERMPRSEANAIERTVTDAAHSVDKQLVVMACGSYRRGKSTCGDVDVL
ITHPDGESHKGVFSKVLHLLHQSGFLTDDLVSHEENGEQKKYMGICRLPGPSQLHRRLDI
IVVPYSEFACALLYFTGSAHFNRSMRAFAKTKHMSLSEHSLNCAVVRQRGVKLVAGTPLH
TPLEKDVFKQLGIPYREPHERDW
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcatggcattctgaaagccttccctaaagtaaagagacccaggccgaatgat
cagaaggacgcgcctgccctcaagaagacgcctgctgaaccaataacaggtacagttttc
caaggagtgacaatatacataattccaactggtatagggaaagccagatgtgatatattc
catcggcagatcactcagaatggaggacaggtagtttccacattctctcccagctgcaca
cacgttgtggttgatgattcagttgattgtaagagagctttgagacttctaaaagtagaa
agactgccctctgctgttcatctggtcaaatgcccttggttaagtgcctgcatcagtgag
aaaagtttactggaccctgaagactacagccttcttcctcctgagagtcccatagttgct
cctgctgagaagtcaaatgagatatcaatcagtccagttccagatgtagcagcaactgca
gcacaggatcctttgaaagttcttgaaaatcaagaaaatcctcaagaaactcttacagag
acggtgccagaaattcaggaggagcaccatgaggaagatggtgtatctcagaacgatctg
gaggccttgatcagtggcgttcacccatctgagagcaacccgagccagagtttggcagag
aatccagttttgtctgggaagtgggtttgttcccagccgtccacaactaaaggggagaac
cataacaaacacattactgacaaactggagccgctggccaaagcctatacgcacactggc
gataaatggagagctctgggctactctaaagcaatcaacgcccttaagagctaccacaag
cctatcacttcatatgaggaagcatgtaaaatcccaggcattggtaaacgcatggcagac
aagatcatggaaatcatggaaagtggccatttgcgtaagctagatcacattggggaggag
gtgcctgttcttgaaatgttcactaacatctggggcgctggagccaagactgctcagatg
tggtatcaacagggatttcgcacattggaggatattcgcactaaggcggttttgaatcac
actctaaggatcggactaaaacactacgatgacctccttgagcggatgccgagaagtgaa
gcaaatgccatcgagagaacggtgacggacgcagctcacagtgtggacaaacagctggtg
gttatggcgtgtggttcataccgcagagggaagagcacatgtggagatgtggatgttctc
atcactcaccctgatggagaatcacataaaggtgttttcagcaaagtgttgcacctcctc
catcaaagtggcttcctgacagatgaccttgttagccatgaggagaatggcgaacagaag
aagtacatgggcatctgtcggcttccaggcccttcgcagctccacaggcgcctagacatc
attgtagtgccctattctgaatttgcatgtgctcttctgtacttcactggctccgcccac
ttcaaccgatcgatgagggcattcgctaagaccaaacacatgagcctatcagaacactcg
ctgaactgtgctgtggtgcggcagcgtggtgtgaagctggtggcgggaactcctttacac
acaccgttggagaaggatgtcttcaagcagctcggaataccgtacagagaaccacatgaa
cgagactggtga
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