KEGG   Garra rufa (doctor fish): 141337507
Entry
141337507         CDS       T11039                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
grf  Garra rufa (doctor fish)
Pathway
grf03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:grf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    141337507 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:grf03021]
    141337507 (taf5l)
   03036 Chromosome and associated proteins [BR:grf03036]
    141337507 (taf5l)
Transcription machinery [BR:grf03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     141337507 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     141337507 (taf5l)
Chromosome and associated proteins [BR:grf03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     141337507 (taf5l)
    STAGA complex
     141337507 (taf5l)
    TFTC complex
     141337507 (taf5l)
    SAGA complex
     141337507 (taf5l)
    SLIK complex
     141337507 (taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I WDR55 TFIID_NTD2 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_WDR41 ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_Vps41 RMC1_N Beta-prop_DCAF4 Beta-prop_HPS5 Tricorn_2nd Beta-prop_SPT8 Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_IP5PC_F Beta-prop_VPS8 Beta-prop_WDR19_1st PEP5_VPS11_N PROPPIN WD40_like TRIP13_N Period_C
Other DBs
NCBI-GeneID: 141337507
NCBI-ProteinID: XP_073699449
LinkDB
Position
6:8557635..8567287
AA seq 603 aa
MKRVRTEQIQYAVTQYLKRRQYIDTDGSLKGAKLSQSAEEMAASLTVQTESSCANVVSAA
PCQSDPQQYEIQFSRLRSFLQDAEATLVKEVSGVLFPLFLYLHLDMARCGLKGAVDSFYS
RFHSFFQQDPEQKAIVDLLRGAVMPQDVTSNPKLCSLLDHKYVVHLTDQAYNYLLRYLQS
DDNSAICWVLSTHVQVEVTAARRTDYQLYGAGTGAGNTTSTSSSSSTWTAVDGSEGAERV
EVTAGLPQNEAALEALQDCIKRVREGPPSLTTVCFYAFQHTDQLLNTAEVSADSRLLAAG
FDNSAVKLWSLRARKLKAGPHRVDVSKIRLACDVLEEEADDEDASGSEIKTLRAHSGPVY
RTAFLTDGSGLLSCSEDSTVRFWDLNSFTNTVLYRGHAYPVWDVDVSPCSLYFSTASHDR
TARLWSFARTYPLRLYAGHLSDVDCVKFHPNSNYVATGSTDKTVRLWSTQQGASVRLFTG
HRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGSLFKDLRGHTDSITSLSFSQDSSLVA
SASMDNSVRVWDIRSAHGTAPTDGSSSELIGQYTGSTSNILNVQFMACNLLLVTGTALEK
QEQ
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgaagcgggtacggacggagcagatccagtatgcggtgacccagtatctgaagaggagg
cagtacatagacacagatgggtctttgaagggagccaaactctcccagtcggctgaggag
atggcggccagtctgactgttcagacggagtccagctgtgcgaatgtggtgtccgcagcc
ccgtgtcagtcagacccacagcagtacgaaatccagttctccagactgcgctccttcctg
caggatgcagaagcaacattagtgaaggaggtgagcggcgtcttgtttccgctcttcctt
tacctgcatctggacatggcgcggtgtggcctgaagggggcggtagactcattttacagt
cgcttccactcgttcttccagcaggaccctgagcaaaaagcaatcgtagaccttttacga
ggagccgtcatgcctcaggatgtcacctcaaaccctaaactttgctcactcttggatcac
aagtacgtagtgcacctgacggatcaagcgtacaactacctgctgcgttacctgcagagt
gacgacaacagtgccatctgctgggtgctcagcacacatgtgcaggtggaggtgacagca
gcgcgtcgaaccgactaccagctgtacggcgcaggcacaggagcgggaaacactacctcc
acttcctcttcctccagcacatggactgccgtggacgggtcggagggggcggagcgtgtg
gaggtcacggcggggttacctcagaacgaggcggcgctggaggcgttgcaggactgcata
aagcgtgtgcgtgaaggtccgccttcgctcaccaccgtctgcttctacgccttccagcac
acggatcagctgttgaacacggcagaggtgtccgcggacagccgcttgctggcggccggc
ttcgataactccgccgtgaagctgtggagtctgcgggctaggaaactgaaggcaggacct
cacagggtagacgtgtctaaaataagactcgcctgtgatgtgctggaggaggaggccgat
gacgaggacgcttcaggcagtgaaataaaaaccctgcgtgctcacagcggccctgtatac
cgcacagctttcctaacagacggctctggccttctgtcctgttcggaggactcaactgtg
cgcttctgggatctgaacagcttcacgaacaccgtcctgtaccgcggccacgcataccct
gtctgggatgtagacgtcagcccctgtagcctgtacttctccacggcgtcccacgaccgt
accgctcgcctctggagcttcgcgcgcacatatccgctccgcctctacgccggccactta
tctgacgtcgactgtgttaaattccaccccaactccaactacgtggcgacggggtccaca
gataaaaccgtgcgcctgtggagcacccagcagggggcgtctgtgaggctgtttaccggg
catcgaggtcctgttctgtcgctcgccttctcgccaaatggcaaatatctggcgtcggcc
ggagaggaccagagactcaaactgtgggacctggcgtccggcagcttgttcaaagacctg
cggggtcacaccgacagcatcaccagcctctccttcagccaggacagcagtctggtggcg
tctgcctctatggacaactctgtgcgagtgtgggacatacgcagcgcccacggcaccgca
cccaccgacggctccagcagcgagctgatcggacagtacacgggaagcactagcaacatc
ctcaatgtgcagttcatggcctgtaacctgctgctggtgacggggactgcgctggagaag
caggaacagtga

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