Garra rufa (doctor fish): 141338644
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Entry
141338644 CDS
T11039
Name
(RefSeq) methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like
KO
K01968
3-methylcrotonyl-CoA carboxylase alpha subunit [EC:
6.4.1.4
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf00280
Valine, leucine and isoleucine degradation
grf01100
Metabolic pathways
Module
grf_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09100 Metabolism
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
141338644
Enzymes [BR:
grf01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.4 methylcrotonoyl-CoA carboxylase
141338644
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
Biotin_carb_N
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
ATP-grasp
Biotin_lipoyl_2
RimK
ATP-grasp_3
ATPgrasp_ST
HlyD_3
GARS_A
HlyD_D23
NQRA_N
RnfC_N
ATP-grasp_4
Motif
Other DBs
NCBI-GeneID:
141338644
NCBI-ProteinID:
XP_073700345
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Position
7:complement(44172660..44200476)
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AA seq
710 aa
AA seq
DB search
MAAVFLKTQINRTIYKQLLTLIWTKGSIRHASVGRIEKVVIANRGEIACRVMRTAKKMGV
RSVAVYSDADRHSMHVAMADEAYHIGPAASQQSYLRMDKILEVAKKSSAQAVHPGYGFLS
ENTEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKHIMSAAGVPIIEGYHGEDQSDAKLQS
EAARIGYPVMIKAVRGGGGKGMRIAHSEAEFHEQLESARREARKSFNDDVMLIEKFVENP
RHVEVQVFGDQYGDAVYLFERDCSVQRRHQKIIEEAPGPGISPEVRRKLGEAAVRAAKAV
NYVGAGTVEFIMDAQHNFYFMEMNTRLQVEHPVSEMITGTDLVEWQLRVAAGERLPLSQE
HIMLQGHSFEARIYAEDPNNNFLPGAGPLLHLSTPQGDQCTRIETGVREGDEVSAHYDPM
IAKLVVWGEDRSAALKRLRYCLRQYNIVGLNTNIDFLLSLSGHPEFEAGNVHTSFIPQHY
DQLFPAAQRPSGEVLCQAALGLLLREKQHTEKYRNQTSDMFSPFASSNGRRFNVLQCRNL
TLQLGDDKVALSITYNLDGTYSMETGGQVFHVSGQLQMEGDVTYLSCSVNGVLSRPKLVI
LDNTVHIFSMEGSAQVDVPVPKFLAGVSGSSAQGGAVAPMTGTIEKVLVKAGDTVQKGDP
LMVMIAMKMEHTIRAPKAGVIKKVFFKEGSQANRHAALVEMEEEEGAGEE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagtgtttctgaaaactcaaatcaacagaactatatacaaacaactgctgact
ctgatctggaccaaaggatccatcagacatgcatctgttggccggattgagaaagttgtc
atcgctaacagaggagagatagcatgccgggtgatgcggacggctaagaagatgggtgtg
cgctcggtggcggtgtacagcgatgcagacagacattccatgcatgtggccatggcggat
gaggcgtatcatatcgggccggcggcgtcccagcagagttacctgcgcatggacaagatc
ctggaagtggcaaagaagtcctctgcacaggcggtccatcctggatatggattcctgtca
gaaaacacagagtttgctgaactgtgtaaacaagaaggtatcatcttcatcggtccgccg
tcatcagccattcgggacatgggaatcaaaagcacatctaaacacattatgtcagcggct
ggtgtgcctatcattgagggttatcatggagaagaccaatcagatgctaaacttcaaagc
gaggccgcaaggattggttaccctgtgatgatcaaagctgttcgaggcggcggcggaaag
ggaatgcgaatcgcgcactcagaagcagagtttcacgaacagctggaatcggctcgcaga
gaagcccgaaaatcattcaacgacgacgtcatgctgatcgagaagtttgtcgagaacccc
agacatgttgaggttcaggtgtttggtgaccagtacggcgacgccgtatatctgttcgag
agagactgtagcgtacaaagacgacaccagaagatcatcgaggaagctccagggccgggc
atcagtcctgaggtcaggaggaaactcggagaggccgcggttcgagcagctaaagctgtc
aactatgttggagcaggtactgtggagttcatcatggacgctcagcacaatttctacttc
atggagatgaacacgcgtctgcaagtggagcatcctgtctcagagatgatcacaggaaca
gatctggtggagtggcaactgcgtgtagcagcaggggagaggttgcccctctctcaggag
cacatcatgttgcaaggtcattcttttgaagccaggatatacgctgaagaccccaataac
aacttccttcctggagcagggccactgctacacctgtccacgccgcaaggggatcagtgc
actcgcatagagactggggttcgagaaggtgatgaagtgtctgctcattatgaccccatg
atcgctaagctggtggtttggggggaagatcgctcagccgctctgaaaagactcagatac
tgccttcgacaatacaatatcgtgggtctcaacaccaacatcgacttcttactgagtctt
tcggggcatccggagttcgaggcaggaaacgttcacaccagtttcatcccgcaacactat
gatcagctgttcccagcagctcagaggccatccggagaggtgctctgtcaggccgccctg
ggtctgctgctccgagaaaaacagcatacggagaaatacagaaaccaaaccagtgacatg
ttctctccgtttgcctccagtaacgggagacgattcaatgtcctgcaatgcaggaacctg
acactgcaactcggagatgacaaagtggcattatccattacatacaatctagatgggaca
tacagtatggagaccggaggtcaggtgtttcacgtatcagggcagctgcagatggagggg
gacgtgacctacctgagctgctccgtcaatggagtgctgtcccgacccaaactagtcatt
ctggacaacaccgtacacatcttctctatggagggaagtgctcaggtggacgtacctgtg
cccaagttcctggctggtgttagtggctccagtgcacagggtggtgctgttgcacccatg
acaggcactatcgaaaaggttctagtcaaggctggagacacagtccagaaaggagatcct
ctaatggttatgattgccatgaaaatggagcataccatccgtgcacccaaagcaggagtc
atcaagaaggtgttcttcaaggaaggctcacaagctaaccgtcacgcagctttggtggag
atggaagaagaggaaggagctggagaagagtga
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