Garra rufa (doctor fish): 141338700
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Entry
141338700 CDS
T11039
Name
(RefSeq) transcription factor Sox-9-B-like
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141338700
Transcription factors [BR:
grf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
141338700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
141338700
NCBI-ProteinID:
XP_073700412
LinkDB
All DBs
Position
1:75806269..75809264
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AA seq
440 aa
AA seq
DB search
MNLFDSYLKMSDEQDKSLSDAPSPSMSEDSAGSPCPSGSGSDSENTRPEQHLRDFKKNEE
GDKFPVCIRDAVSQVLKGYDWTLVPMPVRVNGSSKSKPHVKRPMNAFMVWAQAARRKLAD
QYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNG
QAEGEDGEQTHISPNAIFKALQQADSPASSMGEVHSPGDHSGQSQGPPTPPTTPKTDLPS
SKADLKREGRPLQEGIDFGAVDIGELSSDVISNMEPFDVNEFDQYLPPHGHPGMAVGAQA
YSAGFGLGAQAWMSKQQQQHAMANGGEQSQGQQRTQIKTEQLSPSHYSEQQQQGSPHYGS
FNLQHYSSSYPAVSRAQYDYTEHQSPANSYYGQYPAFSYVSPSQRPMYTPIADTAGVPSV
PQAHSPQHWEQPVYTQLSRP
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcttcgactcctacctgaaaatgagcgacgagcaggacaagagtctctccgac
gcgcccagcccgagcatgtccgaggattccgccgggtctccgtgtccgtccggctcgggc
tcggacagcgagaacacccgcccggagcagcacctccgagacttcaagaagaacgaggag
ggagacaagttccccgtctgcatcagagacgcggtgtctcaggtgctcaagggctacgac
tggaccctggtgcccatgcccgtccgggtcaacggctccagcaagagcaagccgcacgtc
aagagacccatgaacgccttcatggtttgggctcaagccgcgcgcaggaaactggcggat
cagtacccgcacctccacaacgcggagctcagcaagacactcgggaaactctggaggttg
ctaaacgaaggagagaagcgtccgtttgtggaggaggctgagcgtctgagggtccagcac
aagaaagaccaccccgactacaagtaccagccccgacggaggaaatccgtcaagaacggc
caggcggagggcgaggacggcgagcagacccacatctcccccaacgccatcttcaaagcc
ctgcagcaggccgactctccggcgtccagcatgggcgaagtgcattctccgggagaccac
tcaggtcagtcccaggggcctccaacgccgcccaccacccccaaaacggacctgccgtcc
agcaaagcggatttgaagcgcgaaggccgtcctctgcaggagggcatcgactttggagcg
gtggacattggggagctgagcagcgacgtgatctccaacatggagccgttcgacgtcaac
gagttcgaccagtacttgcctcctcacggacacccggggatggcggtcggcgcccaggcg
tactccgccgggtttgggcttggtgcacaggcttggatgtccaagcagcagcagcagcac
gcgatggccaacggcggagagcagagccaaggccagcagcggacgcagatcaagacggag
cagctgagtcccagtcactacagcgagcagcagcagcagggctctccgcactacggctcc
ttcaacctgcagcactacagctcctcgtaccccgccgtcagccgagcgcagtatgactac
actgagcaccagagtccggccaactcctactacggccagtaccccgccttcagctacgtg
agcccgagccagaggcccatgtacacccctatcgccgacacggcgggcgtcccgtcggtg
ccgcaggcgcacagtccgcagcactgggagcagcccgtctacacccagctctccaggcca
tga
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