Garra rufa (doctor fish): 141339002
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Entry
141339002 CDS
T11039
Symbol
rc3h1a
Name
(RefSeq) roquin-1a
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141339002 (rc3h1a)
04121 Ubiquitin system [BR:
grf04121
]
141339002 (rc3h1a)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
141339002 (rc3h1a)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141339002 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
Prok-RING_4
zf-C3HC4
zf-CCCH_4
zf-CCCH_UNK
zf_CCCH_4
Baculo_IE-1
FYVE
Ribosomal_S4
zf-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
141339002
NCBI-ProteinID:
XP_073700719
LinkDB
All DBs
Position
7:25030742..25050964
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AA seq
1076 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEESHRKPISLGCGHTVCKMCLNKLHRKACPFDQTTISTD
IEQLPVNTALLQLVSGQVPKPSPVTLLTAAEDVKHYEESRTCVEDLALYLKPLSNTRGAG
LNGAAQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLAKGLEAVRTVVHGLVDFIQNHSKKGGDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRMGMRRQLSQSLTQLNEMDLGVGLLSDDG
PPIEGLPRKPSSITNVILASGHESTLAHLVSRGSDPSYDPTHKPDRKDSGSLSAPGSPPN
LLEPIPKPGMLMNSHSRVAGDGAVGQKHMSAVPRVPHMYSQHQSDMYYSETRGPLPPSTQ
YESSQYPTGNPYPHHHVHPRYARHPAPDSGMPPYPDSYSSSYTSERQCANSHYGYPSHHD
SRRHSSYAHPQTFPPREELVRRSPDVPPPLPPQSASYLPEPDSYNHSSQIRNYTRNAYTR
PQPSLDYLHRRRQEIMAQLEERKVASPSPFSSSHSYDPSYPQDIRGQSHYMEENSHGFGH
FREPDYTSSYSPWSCDTIGSYIGSKDIKSKEGMNPMDTQNLDKGKSLRAHGLELQRRAAD
VKDDDPIIPFGSLPTVSRFGVISRTSKPGYPPNSPMPPLPNSAKHAASAADYTYANHSGW
SGDSYQPHQTSQGHFSERSSLSPAVQAREQLRMELQQVNLQISQQTQSRGLENPSSVMSQ
SSRVDWSSGNLSSEQLSLELHQVERDIVMRTQEMENHDGKYKRVSVENGQDEHALQRDEH
PLTLSEGSNGSIGLVQDCGLVSSSMSSLTSKTSSLSLSSEQVASSPDLPKNGVVHS
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagccccgcaatggaccgagtttctgttgtgtcccatctgcacacaaacc
ttcgaggagagccaccgcaagcccatcagcctgggctgtggccacaccgtgtgcaaaatg
tgcctgaacaaactgcaccgcaaggcctgcccgttcgaccagaccaccatcagcacggac
atcgagcagctgcccgtcaacacagcgctgttgcagctcgtcagtggacaggtacccaaa
ccttcccccgtcaccctactgacagctgcagaggacgtcaagcactatgaggagtcacgc
acatgtgtggaggacctggccctctatctcaaacccctgagcaacaccagaggtgcaggg
ctgaatggcgccgctcagagcgttctcagcagacccatgcagaggaagctggtgactctg
gtgcactgccagctggtggaagaagagggccgcatccgggccatgcgggccgcccgctct
ttgggtgaacgtactgtcactgagctcatcctccagcaccaaaacccccagcagctctca
tctaacctgtgggccgccgtcagagccagaggctgccagtttcttggccctgctatgcag
gaagaagcattgaagctggtcctgctcgctttggaagatggctcggccctctcacggaag
gttctggtcctgtttgtcgtccagagactcgaaccacgttttcctcaagcctcaaaaacc
agcataggacacgtggtgcagctcctttaccgggcctcctgctttaaggtgaccaagcga
gacgaggattcctccttgatgcagctgaaggaggagtttcgcacatacgaggctcttcgg
cgggaacacgactctcagatcgttcagatcgcgatggagggcggactgcgaatcgcccct
gaccagtggtcatctctactgtacggcgaccagtcgcacaaatcccacatgcagtccatc
atagacaagttgcagacaccagcatcctttgctcagagcgtgcaggagctcaccatcgcc
ctgcagagaaccggagatccagccaatctcaaccgcctcagaccccatctggagctgctg
gccgacatcgaccccagcccagacgcccctgcacccacatgggagcagctagccaagggg
ctggaagcggtgaggaccgtcgttcacggcctggtggatttcatccagaaccacagcaag
aaaggaggggatcagcagcagccacctcagcacagcaaatacaagacctacatgtgtcgg
gacatgaaacaaaaaggcggctgtcctcgtggagcaagttgcaccttcgcacactctcag
gaagagcttgaaaagtaccgtaagatgaataaacggatgggaatgaggcgacagctcagc
cagtccctgacccagctgaacgagatggaccttggcgtgggtctgttgtctgacgatggg
ccacccatagagggactcccacgcaaaccctcttccatcactaatgtcatcttagcatca
ggacatgagtccactttagcccacctggtttccagaggctcagacccgtcatatgaccca
acacacaaaccagacaggaaggactccgggagcctcagtgcacctggatcacctccaaac
ttattggaacccatccccaaaccagggatgctcatgaattcccactccagggtggccggc
gatggcgcagtgggacagaagcacatgtctgcggtgcctcgagtccctcacatgtattca
caacaccagtctgacatgtattactctgagacccgaggccctctgccaccctccacccaa
tatgaatcctcccagtaccctacaggtaatccttatcctcaccatcacgtccacccacgc
tacgcccgtcaccccgctccagattcaggcatgccaccatatccagattcctattccagt
tcctatacttctgagcgccagtgcgccaactcccattacggatacccttcacaccacgat
agccgtcgccactcatcctacgctcacccccaaacattccccccacgggaggaactggtc
cgtaggagtccagatgttcccccgccgctaccgccccaaagcgcttcgtacctgccagaa
ccagacagctataaccactcaagtcagatcaggaattatacaaggaatgcctacacacga
cctcagccctctctagactacctgcaccgtcgaagacaggagatcatggcccagctggag
gagagaaaggttgcttctccctcgcctttcagctcctcacactcgtatgaccccagctac
cctcaggacataaggggacagagccattacatggaagagaactcccacggttttggacac
ttccgggaaccggactacaccagctcatattcaccttggtcatgtgacaccatcggctcc
tacataggcagcaaggatataaagtccaaagagggcatgaatcccatggacacacaaaat
ttagacaaaggcaaaagccttagagcacacggcttggagcttcaacgcagagcggcagac
gtcaaagacgacgaccccatcattccctttggctccctgccgaccgtgtctcgtttcgga
gtcatctcgcgcacgtctaaaccgggctacccgccaaacagtcccatgccacccttgcca
aactcggccaaacacgcggcttctgctgctgactacacctatgcgaatcacagcgggtgg
agtggcgactcctaccagccgcaccaaacgtctcaggggcacttcagcgagcgatccagt
ttatcccctgccgtgcaggcgcgtgagcagctgaggatggagctacagcaggtcaacctg
caaatcagccagcagacgcagagtcgtggcctggagaacccaagctcagtcatgtcccag
tcatctcgagtggactggtcatctgggaatttgtccagtgaacagctgagtctcgagctg
caccaggtggagagagatatcgtcatgaggacacaggagatggagaaccacgatggcaag
tacaagcgggtctcagtcgaaaatggacaagacgaacacgctctgcaacgagacgagcat
ccactcactcttagtgagggctcaaacggctccattggtttggtccaggactgcggtctc
gtcagcagcagcatgtcctcgctaaccagcaagacgtcatccctcagtttgtcctccgaa
caggtggccagcagcccagatttacccaagaatggagtcgtccactcctag
DBGET
integrated database retrieval system
