Garra rufa (doctor fish): 141339161
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Entry
141339161 CDS
T11039
Symbol
rbbp5
Name
(RefSeq) retinoblastoma-binding protein 5 isoform X1
KO
K14961
COMPASS component SWD1
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141339161 (rbbp5)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
141339161 (rbbp5)
COMPASS/SET1 complex (yeast)
141339161 (rbbp5)
MLL-HCF complex
141339161 (rbbp5)
MLL3/MLL4 complex
141339161 (rbbp5)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_EML
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_LRRK2
Beta-prop_NUP159_NUP214
WDR54
Beta-prop_WDR75_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_WDR11_1st
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
141339161
NCBI-ProteinID:
XP_073700894
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Position
7:complement(11629828..11642537)
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AA seq
537 aa
AA seq
DB search
MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
IISAHIHPVCSLSWSRDGHKLVSASTDNIVSQWDVLTGDCDQRFRFPSPILKLQYHPRDM
DKVLVCPMKSAPVLLTLSDSKHVVLPVDDDSDLNVVAAFDRRGEYIYTGNAKGKILVLNT
NTQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
PMQKLQDLVNRTPWKRCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
EPEQTGADAAEDEEVDVTSVDPIPAFCSSDEELEDYKALLYLPIAPEVEDPEENPFGPPP
DAAGQNATPDDGSAHSGPGDKKQRQPSSDGGPPKKKIRTTTIELQGVPSDEVHPLLGVKG
DSKSKKKAAGRPKGSKGKDKDSPFRPKVCRDRAEGLVGTPGNLVAAAYKQHEVQGLD
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggagttgctcgaatcgttcgggcagaattatccagaggaggcagatggcact
ctggactgcatcagcatggctctgacctgcacgtttaaccgctgggggacgctgctcgcc
gtcggctgtaacgatggacgcatcgtcatctgggacttcctgacgcgaggaatcgccaaa
atcatcagcgcacacatacaccccgtctgctcgctcagctggagcagagacggacacaag
ctggtcagcgcctccaccgacaacatcgtgtctcagtgggacgtcctgacgggagactgc
gaccagcgcttccgcttcccctcgcccatcctcaagctgcagtaccaccccagagacatg
gacaaggtgctggtgtgtcccatgaagtcggcgcctgtcctgctcacactgtctgactcc
aaacacgtggtgctgccggtggatgacgactcggatctgaacgtggtggcagcgttcgac
cggcgcggggagtacatctacactggcaatgccaaaggaaagattctggtgctaaatacg
aacacacaggacctagtggcgtcgttcagagtgacaacaggaaccagcaacaccaccgcc
atcaaatccatcgagtttgcacgcaagggcagctgttttctcatcaacacggcagaccgc
atcatccgcgtgtacgacggccgagaaatcctgacgtgtggcagagacggagaacccgaa
cccatgcagaaactacaggacttggtcaacaggacgccgtggaagcgctgctgtttttcg
ggtgacggcgagtatatcgtggcaggatcggcgcggcagcacgcgctctacatctgggag
aagagcatcgggaacttggtgaagatcctccacgggacgcgaggagagctgctgctggac
gtcgcctggcatccggtgcggccgatcatcgcctccatctccagcggcgtggtgtccatc
tgggcccagaaccaagtggagaactggagcgcgtttgcgccagactttaaagagctggat
gagaacgtggagtatgaggagagagaatcagagtttgacatcgaggacgaggacaagagc
gaacctgagcagaccggtgcggacgctgctgaagacgaggaggtggacgtcacgtcagtt
gatcctatcccagcattctgcagcagcgacgaggagctggaggactacaaagcgctgttg
tatttgcccatcgctccagaagtggaggaccctgaggagaatccgttcggtcctccgccg
gacgccgcgggtcagaacgccacgcccgacgatggctccgcccacagcggccccggagac
aaaaaacagcggcagccctcgtctgacggaggcccgcccaagaagaagatccgcaccacc
accatcgagctgcagggcgtccccagcgacgaggtgcatccgctgctgggcgtgaagggc
gacagtaagtcgaagaagaaggcggcggggcggcccaagggatctaaaggtaaagacaaa
gactctccgttcagacccaaagtgtgccgggacagagcggaggggctggtggggacgcca
ggaaatttggtcgcagcagcgtacaagcagcacgaggttcagggtttggactga
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