Garra rufa (doctor fish): 141340066
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Entry
141340066 CDS
T11039
Symbol
col4a2
Name
(RefSeq) uncharacterized protein col4a2
KO
K06237
collagen type IV alpha
Organism
grf Garra rufa (doctor fish)
Pathway
grf04382
Cornified envelope formation
grf04510
Focal adhesion
grf04512
ECM-receptor interaction
grf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141340066 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141340066 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141340066 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
141340066 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141340066 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141340066 (col4a2)
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
141340066 (col4a2)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141340066 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
141340066
NCBI-ProteinID:
XP_073701102
LinkDB
All DBs
Position
8:9552657..9649266
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AA seq
1669 aa
AA seq
DB search
MEGENHLQHWNTLRCFLLCLAVLILTTEVNAGVKKTGGPCGGRDCSGGCQCFPEKGARGF
PGPLGPQGPSGPNGRPGDHGLQGHKGEKGDHGRGGIMGPKGSVGMEGVPGFNGADGVPGH
PGPSGPRGKPGADGCNGTRGDSGIPGQPGFNGGSGISGRPGMKGEKGDPLEVWVYMERFR
GDPGQPGLPGFIGPTGDPGYRGLPGLQGPWGHTGIKGVKGQKGESTKILKGVKGELGETG
EPGPPGPYSQVRPPPPEWQGVKGLKGYKGEPGDLGYLSTKGETGVSGLPGDRGNPGLNGF
PGLRGDTGLPGFPGNSGRKGDIGEPGELLGPVDDTGAGPPGPPGERGPIGRYGPKGAKGQ
PGPQGPPPTEQQPVDLWGPEGPRGQRGPKGEAGEPGNPATQPGPPGPDGLAGFSGPPGPK
ASLEEHFKGAPGPRGRPGSAGKKGLKGDHGPCDCNVKSPPGLPGPPGDAGDTGMVGEWGQ
QGDQGEPGPRGLDGVTGFPGARGLPGPKGSKGELRVATQKGQPGDPGEPGASGFPGEQGR
PGFDGRNGEPGFQGPPGEGPVGEPGDKGYTGRPGAPGLIGQIGHTGLILGAAKGIRGFPG
DQGQAGIDGQRGLPGAPGDCSSQGKDQWSISVECIGDPGPPGETGKPGLPGFDGFPGVQG
AKGSPGLFGEPGAKGERGEPGRGGPPGPRGFVGPRGALGDHGTKGVEGAPGLFGKPGLDG
ALGEKGEHGEVLGASPGAPGDFGLPGQRGVIGLPGDPGNQGHPGMEGMPGMIGLKGESGP
PGLQGEIGNPGPPGTFGFPGQSGQTGPPGPPGKTGEPGPSGERGDQGNPGFPGPEGVKGF
LGEPGNVGLQGNIGPPGDPGNQGPFGIDGFPGLKGSKGGQGLTGFPGMPGNRGVKGFSGL
KGTIGDPGHQGVKGLPGSPGLKGDRGLMGPPGEKPIIHITPHMKEVMKGAKGDHGNMGDP
GFTGPRGPKGFPGVPGTEGRDGHPGEPSDAKGTKGLPGTEGFPGTKGMPGPTGLPGIEGF
PGMPGPRGDKGSSGAYGRSGESGIKGIKGELGPAISLPGSTGLRGETGLPGPFGEKGLAG
PTGDRGSPGFDGIEGMKGYSGEPGKVGAPGSEGLQGFPGTQGQKGWPGVPGLEGTPGIQG
QPGQKGFPGLKGIFGLDGLKGQKGIVGTPGLDNFGRPGEPGAKGERGETGISSTEAGTPG
EVGFKGYIGDPGNKGESGRPGLPGPRGPQGFSDIKGAQGDYGFPGPKGLPGFPGPRGIPG
DSSPFGGKGERGNPGDFGFTGEKGFQGDSGEKGPSGEPGVSGRKGEKGEPGMMGFPGRNG
FGGDRGPVGPKGDTGPPGFPGSPGAKGLPPVPLKLPGERGPPGQMGIQGPQGRNGNPGPA
GPPGDQGIVGPQGEKGMPGLPGIPGNPGFRGDPGQLGHPGLQGEEGFRGSPGLPGPVGMP
GRSVNVGYLLVKHSQSEQIPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFN
TMPFLYCNPGDVCYYASRNDKSYWLSTTAPIPMMPVEEGEIKPYISRCSVCEAPSVAIAI
HSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAK
GTCHYFANKQSFWLTSIDQTFQSSPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgagaaccatctacagcactggaacacattaaggtgttttctgttgtgcctt
gcagtccttatccttacgactgaggtcaatgcaggagtgaagaagactggtggaccatgt
ggggggagagactgcagcggagggtgtcaatgttttcctgagaagggtgcaaggggattt
cctggaccccttggtccccaggggccctcaggccctaacgggcgaccgggagaccatggt
cttcaaggccataaaggagagaagggagaccatggcagaggagggattatgggtccaaaa
ggaagtgtgggaatggagggtgttccagggtttaatggagcagatggtgttccgggccat
cctgggccgtctgggcctcgtggaaaaccaggagctgacggttgtaatggaacccgggga
gattcaggaataccaggccaaccaggattcaatggaggatctggaatatcaggccggcca
ggaatgaagggggagaagggtgaccctttagaggtttgggtctacatggaaagattcagg
ggagatccagggcagccaggtttaccaggatttattggaccaactggtgaccccgggtat
agaggactgccaggattacaaggtccttggggtcatactggcattaaaggtgttaaagga
caaaagggtgaaagtactaagatattaaaaggagtcaaaggagaactgggggagactgga
gagccaggcccaccaggaccttactcacaagtccgtccaccccctccagaatggcagggt
gtgaaaggcttgaaaggttataaaggtgaaccaggagatttgggatatttatccaccaaa
ggagagactggtgtgtcagggcttcctggagatcggggaaacccaggactgaatggcttt
cctggacttaggggtgacactggactaccaggtttcccaggaaattctggccgcaaggga
gacattggagaacccggagagctgttaggtcctgttgatgatacaggagcgggtcctcca
ggacctccgggagagcgtggtccaattggaaggtatggtcctaagggtgctaaaggacag
ccgggtccccaaggcccccctcccactgaacaacaaccagtggatttgtggggtccagag
ggaccacggggacaaagaggacccaaaggtgaagctggcgaacctggtaatcctgccact
cagcctgggccacctggcccagatgggcttgctggattttctggaccacctggacccaag
gcatcattggaagaacacttcaaaggtgcaccaggaccacgtggacgtccaggaagtgca
gggaaaaagggattaaagggtgatcatggtccgtgcgattgcaatgtaaaatccccacct
ggtcttccgggtcctcctggtgatgctggggacactggcatggtgggcgagtggggtcag
cagggtgatcagggagagcccggacccagagggctggatggtgtaactggtttccctggt
gcaagaggattacctggacccaaaggcagtaaaggagagctgagagtcgcaacacagaaa
ggacaacctggtgacccaggggaaccgggtgctagtggtttcccaggagagcaaggaagg
cctgggtttgatggaagaaatggtgaaccaggttttcaaggacctcctggagaaggtcct
gtaggtgagcctggagacaagggatacacaggtcggccaggtgctccaggtctaataggt
caaataggacatactggtttaattcttggagcagctaaaggtataagaggctttcctgga
gaccaaggacaagctggtattgatggacaacgagggttacctggtgctccaggagactgt
agctcacaaggaaaagatcagtggagtatttcagtggaatgtattggagatcctgggcca
cctggagagacagggaagcccggacttccagggtttgatggatttcctggagtccaaggt
gctaaaggctcaccgggtctttttggagaacctggagccaaaggagagagaggtgaacca
ggtagaggaggcccacctgggccgagaggatttgttggacctcggggcgccttaggagac
catggcaccaaaggtgtggaaggagctccaggcctttttggtaaaccaggtttagatggt
gctttaggggaaaagggtgaacatggtgaagttttaggagcatctcctggagcccctgga
gactttggactgcccggacagaggggtgtcattggtcttccaggagacccgggaaatcaa
ggacacccaggtatggagggaatgcccggtatgattggccttaagggtgaaagtggccct
ccaggtcttcaaggagagataggaaatcctggaccaccaggaacatttggctttcctggg
caatccggtcaaacaggacctcctgggccacctggaaaaactggagaaccaggtccaagt
ggagaaaggggagatcagggaaacccaggcttccctgggcctgaaggtgtgaagggtttc
cttggagaacctggaaatgttggtctacaaggaaatattgggcccccaggagatccagga
aatcaggggccatttggtattgacggttttccagggttaaaaggttccaaaggtggtcag
ggcctgacgggtttccctggaatgcctggcaatagaggtgtgaagggattttcgggactg
aaagggacaataggggatccaggacatcaaggtgtaaaaggacttcctggctctccaggt
ctaaaaggtgacagagggttgatggggcctccaggtgaaaagccaatcatacatataaca
ccacatatgaaagaggtcatgaaaggagctaaaggtgaccatggaaatatgggagatcct
ggcttcactggtcccagaggtcctaaaggttttccaggtgttccaggaacagagggtaga
gatggacatccaggtgagcccagtgatgcaaagggtactaaaggtcttcctggaacagaa
ggatttccagggactaaaggaatgccagggcccaccggacttcctggaattgagggtttt
cctggaatgcctggacccaggggtgacaaaggctcgtctggtgcctatggacgatctgga
gaatctggaatcaagggaataaaaggtgaattgggtcctgccattagtcttccaggatca
acagggctgagaggtgaaactgggctgcctggacctttcggtgagaagggactcgcaggt
cctactggagatagaggaagtcctggttttgatggcattgaagggatgaaaggctattca
ggagaacctggaaaagttggagcacccggttctgaaggcctacaaggtttcccaggaacc
cagggtcaaaagggctggcctggtgtacctggactggaaggaacccctggaatccaaggc
caaccaggacaaaaaggatttcctggtcttaaaggcatttttggattggatggcctgaag
ggtcaaaagggtatcgtgggtactccaggtttggacaactttggtcgtccgggtgagcca
ggagcaaaaggagagagaggagagaccggcatctccagcacagaggctggtacccccggc
gaggtgggattcaagggttacattggagatccaggtaataagggtgaatctgggcgtcca
ggtttaccgggtcctcggggcccacaaggattctctgatataaaaggagcacaaggcgac
tatggctttcctggcccaaaaggacttccaggttttcctggtcccagagggatcccaggt
gactcgtctccatttggaggaaaaggagagagaggaaatccaggtgatttcggatttact
ggagaaaagggattccagggggattcaggagaaaaaggaccctcaggggaacctggagtg
tcaggaagaaaaggtgagaaaggagagcccggaatgatgggatttccaggaagaaatggt
tttggaggtgataggggccctgttggaccaaaaggagataccggacccccaggttttcct
ggctcacctggagctaaaggacttccaccagttccattgaaactaccaggcgagagagga
ccacctggccaaatgggtattcaaggaccacagggacgaaatggaaaccctggccctgct
ggacctcctggtgatcaagggattgtgggtccacagggtgaaaaaggcatgccaggtctc
ccaggaataccaggaaatccaggcttccgtggagatcctggacaattgggccacccgggt
ctgcaaggcgaagaagggttcagagggagccctggtttacctggtcctgttggaatgcct
ggccgcagtgtcaatgttggctacctgctggtgaagcacagtcagtctgagcagatccca
atgtgccctgtgggcatgtccaagttatgggacggttacagtcttctgtactttgaggga
caggaaaaggcccacaaccaagacttgggtttagctggctcatgtctcccccgttttaac
accatgcccttcctgtactgcaatcctggagacgtgtgctactatgccagccgcaatgac
aaatcctactggctgtccaccaccgccccaattcccatgatgcccgtggaagagggtgaa
ataaaaccatacatcagccgttgctccgtgtgcgaagctccatctgtggccatcgccata
cacagtcaagacataaccatcccacaatgcccagcaggctggagaagtctctggattggc
tattccttccttatgcacacggcagctggagatgaaggtggtggtcaatctctggtgtct
cccggctcctgtctagaagatttccgcaccactcccttcatcgagtgtaacggagccaag
ggtacatgtcactacttcgccaacaagcagagtttctggttgacatctattgatcagacc
ttccagagttccccttcttctgagacactaaaagccggtcagctcctttcacgcatcagc
cgctgccaagtgtgtatgaagaacctgtga
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