Garra rufa (doctor fish): 141340145
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Entry
141340145 CDS
T11039
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
grf04147
]
141340145 (col18a1a)
00535 Proteoglycans [BR:
grf00535
]
141340145 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141340145 (col18a1a)
Exosome [BR:
grf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
141340145 (col18a1a)
Proteoglycans [BR:
grf00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
141340145 (col18a1a)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141340145 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
141340145
NCBI-ProteinID:
XP_073701174
LinkDB
All DBs
Position
8:complement(31046357..31073060)
Genome browser
AA seq
1255 aa
AA seq
DB search
MQQCSSNLQGSGDYGASGDGDRPPPVQPTPPSSRPIQQPPVTSRPLVERQQSGSVDSSWQ
TSGSYGDSRQISGSYGSSRKTSGDSRKTSVSYGDSRRTSGSYGDSEQTSGSYGDSQKNSG
SSGGSRPSSGSYGGSRQTSGSYGDSRQTLDSVDITRQASGSYDGSRQATNSLRPSGSAGD
GVRYSVESSLGSAGPTGARGEKGDRGEKGTKGDRGLVGPKGDSGSGSVSTGGARGEKGDA
GEKGMKGNPGFGYPGSKGDRGPAGPPGPPGPPGPSAEVEERGDGSVVQRVPGPRGPPGPP
GPTGPAGADGEPGDPGEDGKAGQVGPPGFPGTPGSPGLKGDKGDRGESQPGPRGPPGPPG
PPGPLSRSDRPTFVDMEGSGFDMDSVRAMPGLPGLPGPPGPPGPPGLPGSGSSGSVGFGP
PGPPGQNGAPGQPGLPGSPGADGKPGLSGPKGEKGDGGELGLPGPVGEKGAKGSPGSTGP
AGEGGLAGLPGPMGPVGPPGPPGPPGPGYNVGFDDMEGSGVHFSSVPGVRGPIGIQGPPG
VPGPQGKPGIPGFPGEKGSEGLQGKDGQPGLDGFPGPQGPRGDKGDRGDRGEPGRDGSGL
PGPPGPPGQPGQIIYRYSENYDETGGAGPQGGAGVPGQAGFPGPMGPKGDRGEPGPPGYG
IKGDKGEPGVILGSDGNPLYFGGLTGQKGERGLSGPVGPPGPVGPSGLKGEFGMPGRPGR
PGVNGYKGEKGEPGSGSGYAYPGPPGPPGPPGPPGPPVPLDRFGRYEDYSRNFPATKGEK
GDQGSPGVPGSPGISSNFDIYAFKNEMKGERGESGLKGEKGEPGGGFYDPRFGAVQGPPG
NPGLPGPKGDSIRGPPGPQGPPGSPGVGYDGRPGNPGPPGPPGPPGSPSLPGAYRPQLSI
PGPPGPPGPPGIPGTGSGVTFLRSYDIMMATARRQTEGALIYILDRNDLYLRVRDGVRQV
MLGDYKPLYGELDNEVAAVQPPPVVHYSQDHTANNGAEQISPPHPPIEFPSREPENRNPN
PPDTRYPDPRYPPYTDNRYTDPVQPHRYPVQPERNPITPARRPSPPVNQPEGHIHTSGPG
LHLIALNSPQVGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRETL
PIVNLKDQVLFRSWESLFSDSESRMKDNAPIYSFDGRDVLRDSAWPEKMIWHGSNGRGHR
QTDNYCETWRAGDRAVTGLASSLQAGQLLQQTSSSCSSSYIVLCIENSYMTQSKK
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaatgtagcagtaatctacagggatctggtgattatggagcaagtggagatgga
gacagaccaccaccagtccagccgacacctccctcttctcggccgatccagcagccgccg
gtgaccagcagaccgcttgttgaaaggcagcagtcaggctcagtcgattcctcttggcaa
acgtctggctcctacggtgattctcgacaaatatccggctcatatggcagttctcgaaaa
acatctggggattcccgaaaaacttctgtctcctacggtgattcacgccgaacatccggc
tcatatggtgattctgaacaaacttctggttcatatggtgattcccaaaaaaactctggc
tcgtctggtggttctcgaccgtcatctggctcatatggtggttctcgacaaacttctggc
tcatacggtgactctcgacaaacgcttgactcagtcgatattaccaggcaagcttcaggg
tcatatgatggctctagacaagctacaaactctctaagaccgtcaggctcagctggcgat
ggcgtacgttattctgtggagtccagccttggttctgcaggtccaacaggtgcaagagga
gagaaaggagacagaggagaaaagggtaccaaaggtgacagaggtcttgtggggccaaag
ggcgattcaggatctggatctgtgtctactggcggtgcaagaggagagaagggtgacgca
ggagagaaaggaatgaagggcaatcctggttttggttatcctggatcaaagggtgaccgt
ggccctgctgggcctccagggcctcctggtcccccagggcccagtgcagaggtagaagag
cggggagatgggtcagttgtacagagggtgccaggaccaaggggaccacctggaccacca
ggacccactggccctgctggagctgatggggagccgggtgaccctggtgaagatggaaaa
gctggccaagttggacctcctggttttcctggaactcctggaagtcctggactcaaagga
gataagggagatcgaggtgaaagtcaaccaggacctcgtgggcctccagggcctcctggc
ccaccgggaccactgtctcgctctgataggcctacatttgtggacatggagggctctgga
tttgatatggacagtgtacgggcaatgcctggtttgcctggtctacctggtcctcctggc
ccccctggtccccctggtctacctggctctgggtcttcaggctctgttggttttggccct
cctggtcctcctgggcaaaatggagctccaggtcaaccgggacttccaggttcaccaggt
gctgatggaaaaccaggcttatctggcccaaaaggagagaagggtgatggcggtgagctg
ggccttcctggacctgtgggagagaagggtgccaaaggttctcctggttccactggccct
gctggagagggtggacttgctggtcttccaggaccaatgggacctgttggacctccaggg
ccacctggtcctcctggcccaggctataatgttggttttgatgatatggagggctctggt
gttcacttcagttcagttcctggagtaagaggaccaataggaatccagggacctcctggt
gtcccaggacctcaaggtaagcctggtatcccaggatttcctggtgagaaaggcagtgag
ggacttcagggaaaagatggccagcctggtttggatggcttccctggaccacagggacca
aggggtgacaagggagaccgaggcgacaggggtgaacctggtcgagatggatctggactt
ccaggtccacctggccctcctggacaacctggacaaattatttatcgctattctgaaaat
tatgatgaaactggaggagcagggcctcagggtggtgctggtgttcctggtcaagcaggt
ttcccaggcccaatgggaccaaagggtgatagaggagagcctggtccaccaggctatggc
attaagggggacaaaggagaacccggagttattcttggatctgatggaaacccactttac
tttggtggattgacaggccaaaagggtgagagagggctttctggaccagttggacctcct
ggtccagttggaccttctggtttgaaaggtgaatttggaatgccaggcagacccggccgc
ccaggtgtgaatggatacaaaggagagaagggagagccagggtctggttctggatatgcc
tacccaggtccccctggtcccccaggaccccctggtccccctggacctcctgtgcccttg
gacagatttggtagatatgaagattattcgaggaactttccagctacgaaaggagagaaa
ggagaccagggatctcctggtgttccaggatcgccaggcatttcctctaactttgatata
tatgccttcaagaatgagatgaagggggagcgtggtgagtcaggtcttaaaggagagaaa
ggagagccaggaggtggtttttatgaccctcgttttggagctgtacaaggaccaccagga
aaccctggacttcctggacctaaaggtgactcaatcagaggtccccctggaccgcagggg
ccaccaggatcacctggagttggttatgatggtcgtccaggaaacccaggacctcctgga
ccccctggtcctccagggtcaccatcattgccaggagcctaccgaccacaactcagtatt
cccggacctccaggtccccccggcccacctggaattcctggcactggatctggagtgact
ttcttgaggtcttatgacataatgatggctacggcacgcagacagacggaaggtgctttg
atttacattttggacagaaatgatctctacctcagagttcgggatggtgtcagacaagtg
atgcttggagattataaacccctttatggagagctggacaatgaagtggcagcggtccag
ccgcctcctgttgtacactattcccaagaccacacggctaacaatggagcagagcagatt
tctccaccacacccgccgatcgagtttccaagcagggagccagagaatagaaaccccaat
ccgcctgacacccgttacccagatccacgatacccaccctacactgataacaggtacact
gatcctgtacaaccacacagatacccagtacaacctgagaggaaccccatcactccagcc
cgccgtccaagcccccctgtcaatcaacctgaaggccacatccacacttctggaccaggg
ttgcatcttattgccctgaattctccacaagtgggcaacatgagaggcattcgtggggca
gacttcctgtgcttccagcaagctcgcgccgtgggcctgaagggaacgttcagagccttc
ctgtcttccaaacttcaggatctctacagcatcgtccgcaaatccgacagagagacatta
ccaattgttaacctcaaggatcaagtccttttcagaagctgggagtctctcttcagtgac
tcagagagcaggatgaaggacaatgctcctatctactcgtttgatggcagagatgtcctg
cgggacagtgcctggccagagaagatgatctggcatggctccaatggcaggggtcacagg
cagacggataactactgtgagacatggagggccggagaccgtgcagtgacaggcttggcc
tcatctctgcaggctggccaactcctccagcagacctccagcagctgctccagttcttac
atcgtgctgtgcatcgagaacagctacatgacacaatccaagaaataa
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