Garra rufa (doctor fish): 141340330
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Entry
141340330 CDS
T11039
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141340330 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141340330 (prpf40a)
Spliceosome [BR:
grf03041
]
Complex A
U1 snRNP components
U1 related factors
141340330 (prpf40a)
Complex B
141340330 (prpf40a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
141340330
NCBI-ProteinID:
XP_073701360
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All DBs
Position
8:complement(18131675..18164869)
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AA seq
851 aa
AA seq
DB search
MMGPPGIPPHFPPMGMPPMGQRPPSMAPMPPGIMPPMIPPMGAPPMGQMPAMMPPMMPGM
MMPPRLPAASIQPTGPPGVSPVESAAPAAPGTTSAASTESSPDEQPKKKSVWTEHKSLDG
KTYYYNTESKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKE
LEDLEAMIKAEENGTADVVAPGTAPALTSQSESSVTVAPVAETEATMATGTTEEQPSHVP
AQVAEVSSDVTVNSTEETPSVETQPSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKE
KGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKET
FQRFLENHEKMTSTTRYKKAEQMFADQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQL
RKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHDHGQLHSMSAWMEMYPTVSADIRF
NNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEINTGFEEFGSVISSD
KRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEAT
WEGVRERFLKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRS
RSRSGSESEDDEYHSKKKKRSASKSPSEHSSSGESERSYKKSKKHKKKGKKRRHKSASPE
SEGEKERKGREKEKDKENDKSRGKSRGESKQKSPKRKSTKEEGGWDTSGSELSEGELEKR
RRTLLEQLDAP
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgatggggccaccaggaatcccgcctcacttccctccaatgggaatgccacccatgggc
cagaggccgcccagcatggcccccatgcccccgggaataatgccccccatgataccccca
atgggagctccacccatgggacagatgccagccatgatgccaccaatgatgccaggaatg
atgatgcccccccgtttgccagctgcatcaatccagcccacaggaccgcctggtgtgagt
ccagtggagtctgcagcaccggctgctcctggaacaacaagtgctgcatcaaccgagtct
tcacctgatgaacagccaaaaaagaagtcagtatggaccgagcacaaatcactagatgga
aaaacttattactacaacacagagtccaaacaatccacctgggagaaaccagatgaactc
aaatcacctgcagagcaaatgttgtccaaatgcccatggaaagagtataagtcagacacc
ggcaagccctattattataactcacagaccaaagagtctcgctggaccaaacccaaagag
ctggaggacctggaggcaatgattaaggcagaggaaaacgggacggctgatgttgtggct
cctggcactgcccctgctcttacatctcagagcgagtcctctgttaccgtggcgccagtt
gctgagacagaggctaccatggcgacaggcaccacagaggaacagccatctcacgtgcct
gcgcaggttgctgaggtcagcagtgatgtcactgttaactccactgaggaaacgcccagc
gtagagacacaacccagtaatgatgtttctaaagaggagagacctgagctggtgaagaag
gtttacaagtggaacacaaaagaggaggcaaagcaggcatttaaagaactgttgaaagaa
aagggcgtttcctccaatgcatcatgggagcaggcaatgaagctgataattaacgaccct
cgttacagtgctttgcccaagctgagtgaaaagaaacaggcgttcaatgcttataaagtc
cagacagagaaagaggaaaaggaagaagccagaatcaaatacaaggagtctaaagagact
ttccagcgcttcctggagaatcacgagaagatgacctcaaccacacgatacaagaaagcg
gaacagatgtttgccgatcaggaggtgtggtcatgtgttcccgagagagaccggctggag
atctatgaagatgtgctcttttatttagcaaagaaggagaaggaacaagctaagcagttg
cggaagaggaactgggaggcactgaagaatattttagacaatatggccaatgtgacgtac
agaactacatggtctgaggcacaacagtacctactggataacccgacctttgctgaagat
gaggagctacagaacatggacaaggaagatgcactgatctgtttcgaggaacacatccgc
gctcttgagaaagaggaggaggaagagaaacagaaaactctgctgcgagagagacgcaga
cagcgcaagaacagagaggctttccagaaattcctggatgagcttcacgatcatgggcag
ctgcactcaatgtctgcctggatggagatgtacccgaccgtcagcgctgatattcgcttc
aacaacatgctgggccagccaggctccacccctctggacttattcaagttttacgtggag
gatctgaaagctcgttatcatgatgagaagagaatcattaaagacatcctgaaggataag
ggcttcctggtagagatcaacacaggctttgaggagtttggctctgtgatcagttctgat
aaacgcgccaccacgctggatgcaggaaacatcaaattggccttcaacagtttgctggag
aaggctgaagcacgtgagagggagagagagaaggaggaggccaggaagatgaagaggaag
gaggcagcgtttaagagcatgctgaaacaggccacaccccctctagagcctgaggccaca
tgggagggagtacgagaacggtttttaaaagagcctgcgtttgaggacatcacgctggag
tcagagaggaagaggatatttaaagacttcatgcatgtactagagcacgagtgtcaacat
catcattcaaagactaaaaaacactccaagaaatccaagaaacaccacagaaaacgttcc
cgatctcgatcaggttcggagtcagaggatgatgagtatcactccaagaagaagaaacgt
tcagcttctaaatctccatccgagcactcgtcctctggggagtctgagagaagttacaag
aaatctaagaagcacaagaagaagggaaagaaaagacgacacaaatcagcctcccctgag
tctgaaggagagaaagagcggaaaggaagagagaaagagaaggataaagagaatgacaaa
tccagagggaagtctcgtggagaatccaaacagaaatcccctaaaagaaagagtacaaaa
gaagagggtggatgggatacgtctggaagcgaactgagtgaaggagagctggaaaagagg
aggcgcactctcctggagcagctggacgcaccataa
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