Garra rufa (doctor fish): 141340456
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Entry
141340456 CDS
T11039
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141340456 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141340456 (sf3b1)
03036 Chromosome and associated proteins [BR:
grf03036
]
141340456 (sf3b1)
Spliceosome [BR:
grf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141340456 (sf3b1)
Complex B
141340456 (sf3b1)
Complex C
U2 SnRNP specific factors
141340456 (sf3b1)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
141340456 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
141340456
NCBI-ProteinID:
XP_073701533
LinkDB
All DBs
Position
8:38275440..38289644
Genome browser
AA seq
1315 aa
AA seq
DB search
MAQIAKTHDDIEAQILEIQGMKAALVEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDDEDSSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KKRRQKMIISPERHDPFADGGKTPDPKMQVRTYMDVMKEQHLSKEEREIRLQMVEKAKSG
ELKAVNGSAASQAAVAKRKRRWDQTADQTPSNSTPRKVSSWDQADTGSETPGHTPGHTPS
NSRWDETPGRPKGSETPGATPSTRMWEPTPSHTPAGAATPGRDTPGHATPGHGGASSSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQAEDRSTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLIFNDEKNSYVRYELEYFL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagatcgccaaaacacatgacgacattgaggctcagatcctggaaatccagggg
atgaaagctgccctggtggaaggagctgaccagggggttgggcttgattccactggatat
tatgaccaggagatctacggaggcagtgacagccgctttgccggatatgtgacttcaatt
gctgccaatgagcaggaagatgatgatgatgaagattcgtccacaagtcttcttggacag
aagaaaccaggatatcatgcaccggttgcaatactcaattccattcctcagtccgatgag
cagtatgatccctttgctgaacacagaccacagaagatttctgaccgtgaggacgagtac
aagaaacgcaggcaaaagatgatcatctcccctgagcgtcacgacccatttgctgatggg
ggcaaaacgccggacccaaagatgcaggtcaggacgtacatggatgttatgaaggagcag
catctatccaaagaagagagagagatcaggctgcagatggtagagaaagcaaaatctgga
gagctgaaagcagtgaacggctctgctgcgtctcaagctgctgtggccaaacgcaaacga
cgctgggaccagacagctgaccaaacccccagcaactctacacccagaaaagtgtccagt
tgggaccaggcagatacaggttctgaaacaccaggacacacaccaggacacacaccttcc
aacagtcgctgggatgaaacacctggtcgtcccaaaggtagtgagaccccgggagccact
ccgagcacccgtatgtgggagcccacaccaagccacaccccagctggagctgccacacca
ggtcgagacacccctggacatgccactcctggccacggaggcgcctcttccagcgtgcgc
aagaaccgttgggatgaaacaccaaaaacagaaagagagacacctggacatggcagtggc
tgggctgagactccacgcacagacagaggagatgagtcagtgggtgagacgcccacccca
ggtgcaagcaagaggaagtcaagatgggatgaaacaccagccagtcagatgggctcttca
actcctttgctcacccctggaaaaacccctctgggcacacctgctatgaatatggccaca
ccaactccaggtcacctgatgagcatgaccccggaacaactgcaagcttggcgttgggag
cgagagattgatgagaggaatcgcccattgactgatgaagaactcgatgccatgtttcca
gaaggatacaaagtactgcctccaccagcaggatatgtgcccatccgtaccccagcccgt
aagttagctgctacccccacccccatcggaggcatgactggcttccacatgcaagcagag
gacagatctacgaaacaaatgaacgatcagccctctggaaacctgcccttccttaagcca
gatgacatccagtactttgacaaactgctggttgaagttgacgaatccacccttagtcca
gaagaacagaaggagcgcaagatcatgaagctgctcctgaagatcaagaatggaacacct
cccatgagaaaggctgctcttcgtcaaatcacagataaagccagagagtttggtgcggga
cccctttttaaccagatcctgcccttgctgatgtctcctacactggaggaccaggaacgt
catctcttggtgaaagtcattgatcgtatcctgtacaaacttgatgacttggttcgacca
tacgtccacaagattcttgtggtgattgagcccttgctgattgatgaagattactatgct
agagtagagggtagagagatcatctccaacttggcaaaggctgccggtctggccactatg
atttccaccatgaggcctgacattgacaacatggacgagtatgtgagaaacacaacagct
cgtgctttcgccgttgtggcgtctgccctgggcattccatctctgctgcctttcctcaag
gctgtttgtaagagcaagaaatcctggcaggctcgtcacactggtatcaagattgtacag
cagatcgctattctcatgggctgtgctatcctgccccatctccgcagcttggttgagatt
atcgagcatggtctcgtggatgagcagcagaaagtccgaactatcagtgctttggctatt
gctgccctggctgaagctgctacaccatacggtatagagtcctttgattctgtgctgaaa
cctctttggaaaggtatcaggcaacacagaggaaagggtcttgctgccttcttgaaagcc
attggatatttgattcctcttatggatgctgaatatgccaactattacaccagagaagtg
atgcttatccttattcgagagttccagtctcctgatgaggagatgaagaagattgtcctc
aaggtggtgaagcagtgctgtggcactgatggtgtggaagccaattacattaaaacagag
attttgccccccttctttaaacatttctggcagcacagaatggcgttggatagacgcaac
tacagacagttagtggacactacagtggagctggccaataaggtaggggcagctgaaatt
atttcccgtatcgtggatgacttgaaggatgaagctgagcagtacagaaaaatggtgatg
gagacaattgagaagattatgggcaaccttggtgctgctgacatcgatcacaaactggaa
gagcagctaattgacggtatcctgtacgccttccaggaacagacaactgaggactctgtg
atgctaaatggcttcggtacagtggtgaatgctctgggtaagagagttaaaccgtacttg
cctcagatctgcggtacagtgctgtggcgtctcaacaacaaatccgccaaagtccgtcag
caagcagctgacctgatttctcgcacagcggtggtcatgaaaacatgccaagaggaaaaa
ctgatgggccatttgggtgtggtgttgtatgagtatctgggagaagaatacccagaagtg
ctgggtagcattcttggagcccttaaagctatcgtcaatgttattggtatgcacaagatg
acaccacctatcaaagacttgcttccacgtttgactcccatcttgaagaacagacatgag
aaggtgcaggagaactgcattgatctggtgggcagaatcgctgacaggggtgcagagtat
gtgtctgctagggaatggatgcgcatctgttttgaattgctggagttattgaaagcccac
aagaaggccatccgcagagctactgtcaatactttcggttacatcgccaaggccattggt
cctcatgatgtcctggccacactgcttaacaatctgaaggtgcaggagcgtcagaaccgt
gtgtgcacaacggtagccatcgctatcgttgccgagacgtgttcgcccttcaccgtgctt
cctgcgctgatgaacgagtaccgtgttcctgagcttaacgttcagaatggtgtcctgaag
tctctgtccttcctgttcgagtacattggtgaaatgggcaaagattatatctacgctgtc
acacctctgttggaggatgctctgatggacagggatctcgtacacaggcagacagccagt
gctgtggtccagcatatgtctctgggagtttatggctttggctgtgaagattctctcaat
catttgctcaactatgtttggccaaatgtgtttgaaacatctccacacgtcatccaagct
gtcatgggggccctcgagggtctgcgggtggcaattggaccctgccgcatgctgcagtat
tgcttgcagggtttgttccatcctgcacgcaaagtgcgtgacgtgtactggaaaatctac
aactccatctacatcggctcccaggatgcactgatcgcacattatcctcttatcttcaat
gatgagaagaactcatacgttcgctatgagctggagtacttcctgtga
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