Garra rufa (doctor fish): 141340488
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Entry
141340488 CDS
T11039
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141340488 (sox1a)
Transcription factors [BR:
grf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
141340488 (sox1a)
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
141340488
NCBI-ProteinID:
XP_073701581
LinkDB
All DBs
Position
8:22115057..22117288
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AA seq
336 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNPGQTGQNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAGGGVGMSPAGVGQRLESPGGHGGSAGAGYAHMNGWANGTYSGQVAAAAA
AAAMMQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMTALQYSPISNSQSYMSASP
SGYGGISYTQHQNSSVASSAAIGTLSSLVKSEPNISPPVTTHSRGPCPGDLREMISMYLP
TGESGDPSVQSRLHALPQHYQSTTAGVNGTVPLTHI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggaccttcattccccgggaccccaaaccaacacgaat
ccggggcaaacgggtcaaaattcggggagcaaagccaaccaagaccgcgtaaagagaccc
atgaacgcttttatggtctggtcccggggccagcgccggaaaatggctcaggagaacccc
aaaatgcacaactctgaaattagcaaaagactcggggctgagtggaaggtgatgtcagag
gctgaaaagcggccctttattgacgaggcgaagcggttgcgagccatgcacatgaaggag
catccggattacaaatacagaccaaggcgcaaaaccaagaccctgcttaaaaaggacaag
tactcgttggctggcggcttgctcggcggtgcgggtggtggggtcgggatgagtcctgct
ggggtcggccagaggttggagagccctgggggtcacggaggctcggccggcgccggctac
gcgcacatgaacggctgggcgaacggcacctactccggccaggtggccgccgcggcggca
gcggctgcgatgatgcaggaggcgcagctcgcttacagccagcacccaggcagtggctct
caccatcaccacgctcatcaccatcacccgcacaacccgcagcccatgcaccgctacgac
atgactgctcttcagtacagccccatctcgaactcccagagctacatgagcgcttctccg
tccggctacggtgggatttcgtacacgcagcatcagaactccagcgtcgcgtcttctgcc
gccatcggtacgctgagctcgctcgtcaagtccgaacccaatataagccccccggttacc
acgcactcccgaggcccctgccccggagacttgagagagatgattagcatgtatttaccg
accggcgagtccggggatccgtctgtgcagagcagactgcatgcattaccgcagcactat
cagagcacaactgccggagtaaacggaactgtccccttgacgcatatttga
DBGET
integrated database retrieval system
