Garra rufa (doctor fish): 141340926
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Entry
141340926 CDS
T11039
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
grf Garra rufa (doctor fish)
Pathway
grf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
141340926 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141340926 (xrcc5)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
141340926 (xrcc5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
141340926
NCBI-ProteinID:
XP_073702144
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Position
8:complement(47881557..47902773)
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AA seq
727 aa
AA seq
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MARATKSALVLCMDVGFSMSNSEPGQEPPFEQAKKVIQKFVQRQVFAENKDEVGLVLFGT
DGTKNNLANDGQYENITVHRHLMMPDFELLEEIASEVQPGGHQADWLDALVVCMDLLQKE
TMGKKFERLNIVLLTDLNIQTSTDQLDVIIESLKKAGITLQFFLPFPVDGEDGTDGRGEG
PGPSAASGRPGKGLSRQQTQGLEMVKQIMTSLEEEDGLEEVYTFSDALEKLSIFKRIERR
PMAWPCQLTIGSSLTIRIVGYKAVTEEKVKKSWAIVDAQSHQRDDVKRETVYCLNDDNET
EVQKDDTIQGFRYGSDIVPFSKVDQDQMKYKSDGKCFSVLGFTKQELIHRHQFMGTQVVK
VFAPRDDEHAAVALSSLIRALDSLKMAAIVRYAYDRRSNPQVGAAFPCIKEKYECLLYVQ
LPFMEDLRQFTFPMLENNKKFKPSESQLSAVDALIDSMMLVEKDEDGESVDILKVNHIPN
PQFQRLFQCLHHRGVNPDDPLPPVEPWLKRVLERPQTVSARCQTPLQDVKAKFPLKVVAK
KKEQKTSADVFGSSADEPDAKKVKVDEETEFNLAEIAAGNITSVGSVNPVRDFCTLVRQK
TVSFDQACQQLTHRIEQLLGNRSPEYYMKSIACIQAFRDQSVSSGNAELFNSYMQSLKRS
IPDRNLQEFWDLLIQDALTLISKDEVDGSTISKQDANQFLAFEKKEEVQAAPAQEDTGDV
DDLLDMM
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgagcaacgaagtcagcattggtgctgtgcatggatgtgggtttctctatgagc
aactctgagcctggccaggaaccgcctttcgaacaggcaaaaaaagtcattcagaagttt
gtccagcggcaggtatttgctgagaataaggatgaggtgggtctggtgctgtttggtact
gacggcactaagaacaatctggccaatgacggccaatatgagaacatcacagtccaccgt
cacctcatgatgcctgattttgagctgcttgaggagattgcgagcgaagtgcaacctggt
ggtcatcaagcggactggcttgatgctctggtcgtttgcatggatcttttgcagaaggaa
accatggggaagaagtttgagcgtttgaacattgtcctgctgacagatctgaatatccag
acctcgacagaccagctggacgttatcattgagagcttgaagaaagctggtatcaccctg
cagttctttttgccgttccctgtggatggtgaggacggaacggatggcagaggggaagga
ccaggaccatcagcggcttctggccgtccaggaaaaggcttgagcagacagcagacacaa
ggcctggagatggtcaaacaaatcatgaccagcctagaagaggaggatggtctggaggag
gtctatacgtttagcgatgctctagagaagctgtccatcttcaagcgcatcgagaggagg
cccatggcttggccctgtcagctgaccatcggcagctctctgaccatacgcattgtggga
tacaaagctgtgacagaggagaaggtgaagaagtcctgggccatagtagatgctcagagt
caccagagagacgacgtcaagagggaaacggtttactgcctcaatgatgataacgaaact
gaagtacagaaggatgacactatccaaggtttccgttatggaagcgacattgtgccgttt
tctaaggtggaccaggaccagatgaaatataagtctgatgggaagtgtttttctgtgctt
ggcttcacaaaacaggagctgattcatcgtcatcagtttatgggaactcaagttgtcaaa
gtttttgcacctagagatgacgagcatgcagcagtggcgctgtcctctttgatccgcgcc
cttgacagcctaaagatggcagcgatcgtgcgttatgcttacgaccgtcgcagcaaccct
caagtgggcgccgcttttccctgcataaaggagaaatatgaatgtctgctgtacgtgcag
ctgccgtttatggaggatctcagacagttcacattcccaatgttggaaaacaacaagaag
ttcaagccctcagagtctcagctgtcagccgtggacgcactgatcgactccatgatgctg
gtggaaaaggatgaggatggagagagcgtggacatcctcaaagtcaaccacattccgaac
ccacagttccagagacttttccagtgcttgcatcaccgcggtgtgaatcctgatgatccc
ctgccgcctgtagagccgtggctgaagagggttctagagcggccccagaccgtgtccgcc
cgctgccagacccctctgcaggacgtcaaagccaagttcccactgaaagtggtggcgaaa
aagaaggagcagaagacgagcgcagacgtgttcggcagcagtgctgacgaaccagatgcg
aagaaagtcaaagtggatgaagaaacagagtttaacctggctgagattgcggcgggaaac
atcacatcggttggcagcgtcaatccagtcagagatttctgcacgttggttcgacagaag
accgtttctttcgatcaggcgtgccagcagctgacccacaggattgagcagttgctgggc
aacaggagccccgagtactacatgaagagcatcgcctgtatccaggccttcagggatcag
tccgtatcgagtggaaacgcagagctgttcaacagctacatgcagtccctgaagaggagc
attcctgacaggaatcttcaggaattctgggatctgctcatccaagatgctctgacgctg
attagcaaagatgaagtggacggaagcaccatttccaaacaagacgcaaaccagttcctg
gcgtttgagaagaaagaggaagttcaggcggctccagcacaggaagacactggagatgtg
gatgatctgctggacatgatgtaa
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