Garra rufa (doctor fish): 141340927
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Entry
141340927 CDS
T11039
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
141340927 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141340927 (mid1)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141340927 (mid1)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
141340927 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COS
SPRY
zf-B_box
ANCHR-like_BBOX
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
Pur_ac_phosph_N
zf-C3HC4
zf-C3HC4_2
TRIM_CC
zf-RING_2
FN3_DSCAM-DSCAML_C
PRY
zf-C3HC4_3
F36G3_coil
zf-RING_5
DUF4998
DRC10_N
DUF8512
Motif
Other DBs
NCBI-GeneID:
141340927
NCBI-ProteinID:
XP_073702145
LinkDB
All DBs
Position
8:complement(48898838..48946593)
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AA seq
678 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTSFDESSKPFSAFQCPTC
RYVITLDQQGLEGLKRNVTLQNIIDRFQKASLSGPNSPTETRRCNLPRNPFPSAVDDGTA
MSSPCEAVQCQFCEQDPPQEAVKTCVTCEVSYCQECLRATHPNKKPFTGHRLTEPVPDSR
LRGLACPEHGEEKVNMYCVTDEQLICSLCKLVGHHREHQVAALGERFDKLKQMLDSNLSN
LIKRNSELENLMAKLIQTCQHVEHNAAHQESKLAEECDTLINIVQQRRQIIGTKIKEGKV
VRLRKLAQQIANCKQFVERSSSLIVQADQVLKETDHARFLQTAKSVSERVSMATASSQVL
IPEINLNDTFDAFALDFSREKKMLEGLDYLTAPNAPTIREELCTASHDTITVHWTSEDEF
SVVSYELQYTISTGQTNVVSLCNSMDSWMIVPNIKQNHYTVHGLQSGTKYIFIVKAMNQA
GSRSSPPAKLKTNSQPFKLDPKSAHRKLKVSHDNLTVERDEVSSMKSHAQDRFGSTGNYG
VTGNVFIDSGRHYWEILIGGSTWFAIGIAYKSAPKHGWVGKDSASWVLSRCNTSWAVRHN
SKEFPIEPSPHMRRLGVLLDYDSGSLAFYDAAGTQHLYTFDIAFSQPICPVFSVWNKCLT
VLTGLPIPDHLEISDPRD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggacacactggagtcggagttgacttgcccaatctgtctggagctattcgaggatcct
ctactgctgccgtgcgcccacagcctgtgcttcaactgcgcccatcgcatcctggtgtcc
cactgcacgtccttcgacgagtccagcaaaccgttctccgctttccagtgtcccacctgc
cgctatgtcatcaccctcgaccagcagggtctagaaggcctcaagcgcaacgtcactctg
cagaacatcatcgaccgcttccagaaggcctccctgagcggccccaactccccgaccgag
acgcgccgctgcaacctgccgcgcaacccgttcccctcggcggtggatgacggcacggcc
atgagttcgccctgcgaggccgtccagtgccaattctgcgagcaggacccgccgcaggag
gcggtgaagacctgcgtcacctgcgaggtttcgtactgccaggagtgcctccgcgccact
caccccaacaagaagcccttcacgggacaccggctcaccgaacccgtgccggactcgcgc
ctcagaggactggcctgtcccgaacacggagaggagaaggtcaacatgtactgcgtgacg
gacgaacagctcatttgctcgctctgcaaactggtcggacatcatcgcgaacaccaggtg
gcggcgctgggagaacgattcgacaagctgaagcaaatgttggactccaatctcagcaat
ctgatcaagaggaacagtgagctggagaacctgatggccaaactcatccagacctgtcaa
catgtggagcacaatgcggctcatcaggagagcaaactggcagaagagtgcgacacactc
ataaacatcgtacagcagagaagacaaatcatcggcactaagatcaaagaaggaaaggtg
gttcgtttgagaaagctagctcagcagatagctaactgtaagcagtttgtggagagatcg
tcttcgctcattgtacaggccgatcaggttctgaaagagacggatcacgcacgattcctg
cagaccgcgaagagcgtctcagagcgagtgtcgatggcgacggcgtcctcacaggtcctg
atcccagagatcaacctgaatgacacgttcgacgcgttcgcgcttgacttttccagagag
aagaagatgctggagggtctggattatctcacggctccgaacgctcccaccatccgtgag
gagctttgcacggcgtctcacgacaccatcacagtccactggacatcagaggatgaattc
agcgtggtttcatatgagctccagtacaccatctccaccggacagaccaacgtcgtcagt
ctgtgtaactcgatggacagctggatgatcgtgcccaacattaagcagaatcactacacc
gttcacggcctgcagagcggaaccaagtacatcttcatcgtgaaggccatgaatcaggct
gggagccgcagcagcccgccggctaaactcaagaccaacagtcagccgtttaaactcgac
ccaaagtcggcccacaggaagctgaaggtgtcacatgacaatctgacggtggagcgggac
gaagtctcatccatgaaaagtcatgcgcaggaccgcttcggcagcacggggaactacggc
gtgacgggaaacgtgttcatcgacagcggccgccactactgggagattctgatcggagga
agcacatggtttgctatcggcatcgcctacaaatctgctcccaaacacggctgggtcggt
aaggactctgcatcatgggtactgagccgctgcaacacctcgtgggcggtgcgtcacaac
agtaaggagttcccgatcgagccgtctcctcacatgcggcgtctgggcgtcctgctggac
tacgactccggctctctggcgttttacgacgcggctggaacgcagcacctgtacaccttc
gacatcgccttctcacagcccatctgtcccgtcttcagcgtgtggaacaagtgcttgacc
gtcctcacggggctccccatcccggaccacttggagatcagcgacccgcgcgactga
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