Garra rufa (doctor fish): 141342159
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Entry
141342159 CDS
T11039
Symbol
ubr5
Name
(RefSeq) E3 ubiquitin-protein ligase UBR5 isoform X1
KO
K10593
E3 ubiquitin-protein ligase EDD1 [EC:
2.3.2.26
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
141342159 (ubr5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141342159 (ubr5)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
141342159 (ubr5)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
HECT type E3
141342159 (ubr5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
E3_UbLigase_EDD
MLLE
zf-UBR
Motif
Other DBs
NCBI-GeneID:
141342159
NCBI-ProteinID:
XP_073702649
LinkDB
All DBs
Position
9:2946998..3017119
Genome browser
AA seq
2822 aa
AA seq
DB search
MTSIHFVVHPLPGTEDQLNDRLREVSEKLNKYNCNSHPHLIPLEQAKLKQCVVGPNHAGF
LLEDGRICRISFAVQPDRLELGKPDGNDGSKLSSVSGAGRSSRPGRTSDPPWFLSGSDTL
GRLAGNTLGSRWSSGVNGGSSGGGGSSGGGAGGGSGSGGGGGGGAGGGGSSGRSSTAARD
SRRQTRVIRTGRDRGSGLLGSQPQPVIPASVIPEELISQAQVVLQGKSRSVIIRELQRTN
LDVNLAVNNLLSRDDEDGDDGDDTASESYLPGEDLMSLLDADIHSAHPSVIIDADAMFSE
DISYFGYPSFRRSSLSRLGSSRVLLLPLERDSELLRERESVLRLRERRWLDGASFDAERG
STSREGEPSLDKKSVPLQSPVTLGEELQWWPDKDYVTKFVSIGALYSEMVAVSTKGELYQ
WKWNEPEPYRNAQNPSIHHPRVPFLGLTNEKITHLSANSIRATVATESNKVATWVDETLS
TVAAKLEHGAQTFPELQGERIISLHCCALYTCAQLESSLYWWGVVPFSQRKKMLEKARAK
NKKPKSSAGISSIPNITVGTQVCLRNNPLYHAGAVAFSVNAGIPKVGVLLESVWNMNDSC
RFQLRSPESLKNMEKNTKTQEIKTESKPELVKTEMGPPPSPASTCSDTSSIASSASLPYK
RRRSTPAPKEEEKVNEEQWPLREVVFVEDVKNVPVGKVLKVDGAYVAVKFPGTSSSVSSQ
SAAPTDSDPSSLLQDCRLLRIDELQVVKTGGTPKVPDCFQRTPKKLCIPEKAEILAVNVD
SKGVHAVLKTGSWVRYCVFDLATGKAEQENHFPTSNLAFLGQSERNVALFTAGQESPIIL
RDGNGTIYPMAKDCMGGIRDPDWLDLPPIASLGMGVHSLVNLPSNSTIKKKAAIIIMAVE
KQTLMQHVLRCDYEACRQYLISLEQAMLLEQNPHALDALLGHRCDGNRNVLHACVSVCFP
VSNKETKEEEEAERSERNTFAERLSAVEAIANAISVVSSNSSGNRTGSSSSRGLRLREMM
RRSLRAAGLGRHESGPSSSDHQDPVSPPIAPPSWVPDPPPMDPDGDIDFILAPAVGSLTT
ASTGTNQGPSTSTIPGPSSEPSVVESKDRKANAHLILKLMCDSVVLRPHLRELLSAKDAR
GMTPFMLAVSGRAYPAAITVLEAAQKIAKGEPGLGEKDDAASVFMEMICPSGTNPDDSPL
YVLCCNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKGHDCKLKRTSPTA
YCDCWEKCKCKTLIAGQKAARLDLLYRLLTTTNLVTTPNSRGEHILLFLVQTVARQSVEH
CQYRPPRIREDRNRKAASAEDSDMPDHDLEPPRFAQLALERVLQDWNALKSMIMFGSQEN
KDPLSASSRIAHLLPEEQMYLNQQSGTIRLDCFTHCLIVKCAPDITFIDTLLGTLVKELQ
NKYTPGRREEAINVTRRFLRSVARVFVILSVEMASSKKKNNFIPQPIGKCRRVFQALLPY
AVEELCNVAESLIVPVRMGIARPTAPFTLASTSIDAVQGSEELFSVEPLPPRPSPDQSSS
SSQSASSYIIRNPQPRRSSQSQTARGRDEEQDDIVSADVEEVEVVEGVAGEEDHHDDQEE
QGEENAEAEGQHDEHDEDGSDMELDLLAAAETESDSESNHSNQDNASGRRSVVTAATAGS
EAGASSVPAFFSEDDSQSNDSSDSDSSSSQSDDVDQETFLLDEPLERTTGSAHANSAAQA
PRSMQWAVRTTPSQRSASGAPSSSSTPAASSTGLIYIDPSNLRRSSAISTSAAAAAAALE
ASNSSSYLTSASSLARAYSIVIRQISDLMSLIPKYNHLVYSQYPAAVKLTYQDAVNLQNF
VEDKLIPTWNWMVSIMDSTEAQLRYGSALSSAGDPGHPSHPLHASQHAGRRERMTAREEA
SLRTLEGRRRAATLLTARQGMMSARGDFLNYALSLMRSHNDEHSDVLPVLDVCSLKHVAY
VFQALIYWIKAMNLQTTLDTTQIDRKRNRELLELGLDNEDSEHENDEDTNQSSTLQDKDE
ESVPAETGQHHPFFRRSDSMTFLGCIPPNPFEVPLAEAIPLADQPHLLQPNARKEDLFGR
PSQGLYSSSYMASKGLTDLTVDMNCLQILPTKMSYSANMKNVMSMESRQRGGEEQPSADQ
DMDASKPGPSPHDLAAQLKSSLLAEIGLTESDGPPLPTFIPHCSFMGMVISHDMLLGRWR
LSLELFGRVFMEDVGAEPGSILTELGGFEVKESKFRREMEKLRNLQSRDLALEVDRDREQ
LIQQTMRQINAHFGRRCTTTPMAVHRVKVTFKDEPGEGSGVARSFYTAIAQAFLSNDKLP
NLDCVQSVSKGMQASNLMQRLRNRDRERERRSGGLRAASRRDRDRDSRRQLSIDTRPFRP
ASEGNPSDEPEPLPAHRQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDS
LRARVEEAMELLITHGRENGADSILDLGLLDAPEKAQQENRKRHGSTRSVVDMELDDPDD
GDDNAPLFYQPGKRGFYSPRPGKNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKV
LLGRKVNWHDFAFFDPVMYESLRQLIRHSQTEEAEAVFAAMDLAFAIDLCKEEGSGQVEL
LAGGVNMPVTPLNVYEYVRRYAEHRMLVVAEQPLHAMRKGLLDVLPKNALEDLTAEDFRL
LVNGCGEVNVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSP
SLPASEEGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFG
FV
NT seq
8469 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattcacttcgtggttcacccgttacccgggaccgaagaccagcttaatgac
aggcttcgtgaagtgtcggaaaagctcaacaaatacaactgtaacagtcatccacacctt
attccattggagcaggccaaacttaagcagtgtgtggttggaccaaatcatgctgggttt
ctccttgaggatggacgtatctgcaggataagctttgccgtccagcctgaccgactggag
ctcggcaaacccgatgggaatgatggttcaaagttgagcagtgtctcaggggcaggaagg
agctccaggccaggcaggactagtgatccgccctggttcctgtctggttctgacacactg
ggcagactggcaggcaacacccttgggagccgctggagttcaggagtaaatggtggcagc
agtggaggcggaggcagcagcggtggaggcgcaggaggaggcagcgggagcggagggggc
ggtggaggaggcgctggaggaggaggatcttcaggccggtcctccactgcagcccgtgat
tcacgcagacagacccgcgtgatccgcactggcagagatcgaggctccggcctgctgggc
agtcagccacagcccgtaattccagcctcagttatcccagaggagctcatctctcaggcc
caggtggttcttcagggaaagtccaggagtgtcatcattcgagagctgcagcgcacaaac
cttgacgtgaacttggctgtaaacaacctgctgagcagagatgatgaggacggagatgat
ggagacgacacggccagcgagtcctacttacctggagaagacttgatgtcactgctagac
gcggacattcactccgctcaccccagcgtcatcattgatgcggatgccatgttctctgag
gacatcagctacttcggctacccctctttccgccgctcttccttgtctcgtctcggctcc
tcacgagttctccttctccccctagagcgagactctgaactgctccgtgagcgcgagtcg
gtcctgaggctgcgtgagaggaggtggctggatggagcctccttcgatgcggagcgtggc
tccaccagccgcgagggagagcccagccttgacaagaagagcgtgccgctgcagagccct
gtcactctgggcgaagagctccagtggtggcctgataaggactatgtaacaaagtttgtc
agcatcggggctttgtactcagagatggttgctgtcagtaccaaaggtgaactgtaccag
tggaagtggaatgagcctgaaccttacagaaacgcacaaaatccttctatacatcaccct
cgtgtccctttcctgggcttgaccaatgaaaagatcacccacctgtctgccaacagtatc
cgagccactgtggccacggaaagtaacaaggtggcgacttgggtggatgaaactctgagc
accgttgctgctaaactagaacatggcgcacaaacgttcccggagctgcagggagagcgt
atcatctctctgcactgctgtgccctgtacacctgcgcccagctggagagcagcctttac
tggtggggtgttgtgccttttagtcaacggaaaaagatgcttgaaaaggccagagccaag
aacaagaagccaaagtccagtgcaggcatctcgtctatacccaacatcaccgtaggaact
caggtgtgcctgaggaataaccctctttatcacgctggtgccgtggccttctccgtaaac
gctggcatccctaaagtgggcgtcctgttggagtccgtgtggaacatgaacgacagctgc
cgcttccagctccgctcgcccgagagcctgaagaacatggagaagaacaccaagacacag
gagatcaagacggagagcaagccagagctggtgaagactgaaatgggccctccgccctca
cccgcgtccacatgcagtgacacttcctccatcgccagcagcgcttctctaccctacaag
cgaaggcgttcaacgccggctccaaaggaggaggagaaggtcaatgaggagcagtggcct
ctacgagaggttgttttcgtggaggacgttaaaaacgtccccgtgggaaaggtgctaaaa
gtcgatggtgcatatgttgctgtgaaatttccagggacgtcgagcagcgtgagcagccag
agcgcagctcccactgactctgacccctcctcactgctgcaagactgtcgactgctcaga
atagatgagctacaggttgttaaaactggtggaacaccaaaagttccagactgttttcag
cgcactcctaaaaaactttgtatcccagaaaaagctgaaattttagctgtgaatgttgac
tccaaaggagttcatgctgtgttgaaaactggcagctgggtacggtactgcgtctttgac
ttggccaccggcaaagccgagcaggagaatcacttccccactagtaacctggcctttctg
ggccagagtgagcgtaatgtggccctcttcaccgctggccaggagagccccatcattttg
agggacggaaacggcaccatttatcccatggctaaagactgtatgggtggaattcgcgac
cctgattggctagacctcccgcctattgctagtctaggcatgggagttcattcgctcgtc
aaccttcccagtaactccacaatcaagaagaaagcggccatcatcatcatggctgtggag
aagcagacgctgatgcagcacgtgctgcgctgtgattatgaggcgtgcaggcagtatctg
atcagtctggagcaggccatgctgctggagcagaaccctcacgctctggatgctctgctg
ggtcaccgctgcgatggcaaccgtaacgtcctccatgcctgcgtctccgtctgcttccct
gtcagcaacaaggaaaccaaggaggaggaagaagcagagcggtctgaaaggaacacgttc
gctgaaaggctgtctgccgtcgaggccatcgccaatgccatttcagtggtgtccagcaac
agctccgggaaccgcacaggatcgtccagcagccgaggcttgcgtttgagagagatgatg
aggcgctccctccgcgccgcaggtttgggtcgccatgaatccggcccttcctccagcgac
caccaagaccccgtttcaccccctattgcacctcccagttgggtaccagaccctccacca
atggatcctgatggtgacattgatttcatcttggcccctgcagtgggctcccttaccact
gcttccacaggcactaaccagggacctagcacttccaccatcccaggaccttcatctgaa
ccatcagtagtggaatctaaagaccggaaggccaacgcacacctgatactgaagctcatg
tgtgacagcgtcgtcttgcgtcctcacttaagagagctgctttctgccaaggatgctcgt
ggaatgactccgttcatgttggcggtgagcggaagagcttaccctgcagccattactgtt
ttagaggcagcacagaaaatagccaaaggtgaaccaggtcttggagagaaagatgatgca
gcgtctgtgttcatggagatgatctgtccttcaggaaccaacccagatgactctcccctg
tacgtcctgtgctgtaatgacacttgcagcttcacctggactggagctgaacacatcaac
caggatatctttgagtgcagaacttgtggcctgctggagtctctgtgctgctgcactgaa
tgcgccagggtttgtcacaagggtcatgactgcaaactgaagagaacgtctcccactgcg
tactgtgactgctgggagaagtgtaaatgcaaaaccctcattgcgggccagaaagcagct
cgtttggatctgctctaccggctgctgacaaccactaatctggttaccactcctaacagc
aggggagaacacatcttgctgttcctggtgcagactgttgcaaggcagagtgtggaacat
tgccagtatcgaccacctcgcatacgagaggacaggaacaggaaggctgccagtgctgaa
gactctgatatgccggatcatgacctggagcctccacgcttcgcccagctggctctagag
cgcgtgttgcaggactggaacgcgctgaagtccatgataatgttcggctctcaggaaaac
aaagacccactaagcgccagcagcaggattgctcaccttttacccgaggaacagatgtat
ctgaaccagcaaagtggcaccatcaggctggactgtttcacacattgcctcattgtcaag
tgtgcaccagacatcacctttattgacacgctgttggggactctggtgaaggaactgcag
aataaatacactcccggccgcagagaggaggccatcaatgtcacacgcaggttcctgcgc
tccgtggcccgagtctttgtcatccttagtgtggagatggcgtcttccaagaagaaaaac
aacttcatccctcagcccatcggaaagtgcaggcgtgttttccaggctctgttgccgtac
gcagtggaagagctctgcaatgtggccgagtctctgatcgtcccggtgcggatgggcatc
gctcgccctacagcgcccttcactctggccagtaccagcatcgacgccgtacagggcagt
gaagagctcttctctgtggagcctctgccgccacgaccttctccggatcagtccagcagc
tccagtcagtctgcctcttcatacatcatcaggaacccccagccccgccgcagcagccag
tcccagacggcccgcggccgagacgaggagcaggatgatatcgtttccgctgatgtagaa
gaggtggaggttgtggagggcgttgcaggtgaggaggatcaccatgatgatcaggaggag
cagggagaggagaacgcagaagccgaaggacagcatgatgagcatgatgaagatgggagc
gacatggagctggatctattagctgctgctgagactgagagtgacagcgagagtaaccac
agcaaccaagacaacgccagtggacgcaggagtgttgtgaccgccgccaccgctggatct
gaagcaggtgccagcagcgttcctgctttcttctctgaggacgactctcagtcgaatgac
tccagtgactcggacagcagcagcagccagagtgacgatgtggatcaggagactttcctg
ttggatgagcctttggagagaaccacgggctcagcgcatgccaacagtgcggcccaggcg
ccgcggtccatgcagtgggcggttcgcactacgcctagtcagcgctctgccagcggcgcc
ccatccagctcatccacacctgctgcgagctccactggcctcatctacatcgatccttcc
aacctgcgacggagcagcgccatcagcaccagcgcagcagccgccgccgcagccctagag
gccagtaactccagcagctacctgacatccgccagcagcctggctcgagcctacagcatc
gtcatccggcagatctctgacctcatgagcctcatacccaaatacaaccacctggtctac
tcgcagtaccccgctgctgtgaaactcacctatcaggacgccgtcaatctgcagaacttt
gtggaggataagttgatccccacctggaactggatggtgtccatcatggattccactgaa
gcgcagctgcgttacggatccgctctgtcatcagccggagatcctggtcaccccagtcac
ccgctgcacgcttcacagcacgcaggacgcagggagcgcatgacggcacgagaggaggcc
agtctccgcactcttgaaggtcgaaggcgtgccgcaacccttctgacagctcgtcagggg
atgatgtcggcacgaggagacttcctgaactacgccctttctctgatgcgttcccataat
gatgagcattcggatgtcctgcctgtgctggatgtgtgttcgctcaaacacgtggcgtac
gtcttccaggccctcatctactggattaaagccatgaatctgcagacgacactcgacacc
actcagattgacaggaagagaaatcgtgagctgcttgaacttggtctggacaatgaggac
tctgagcacgagaatgacgaagacaccaatcagagctccacattgcaggacaaggacgag
gagtcagtacctgctgagaccggacagcaccatccgtttttccgccgctcggactccatg
accttcctgggatgcatccctcccaacccttttgaagtgcccctcgctgaggccattcct
ctggctgaccagccgcatctcctgcagcccaatgccagaaaagaggacttgtttggaaga
ccaagtcagggtctgtattcgtcttcgtacatggccagtaaaggcctcacagatctgact
gtggacatgaattgcttgcagattctacccacaaagatgtcgtattcggcgaacatgaag
aacgtgatgagcatggagtccaggcagaggggtggcgaggagcagcctagcgcagaccag
gatatggacgcgtccaaaccaggcccttcacctcacgatcttgcggcccagctgaagagc
agcctgctggcagagattggattgactgagagcgacggcccaccgcttcccacatttatt
ccacactgtagctttatgggaatggtgatctctcacgacatgctgctgggccgctggcgg
ctttctttggagttgtttggccgcgtcttcatggaggacgttggagcagaaccaggatct
atcctgaccgaactgggtggtttcgaggtgaaggagtccaagttccggcgtgagatggag
aagctgagaaacctgcagtcacgtgatctggccctggaggtggaccgcgaccgagagcag
ctcatccagcagaccatgcggcagatcaacgctcacttcggccgccgctgtactactacg
cctatggcggtgcaccgcgttaaagtgactttcaaagatgaaccgggagagggcagcgga
gtggcccggagcttttacacagctatcgcacaggccttcctctctaatgacaagctgccc
aatctggactgtgtacagagtgttagcaagggaatgcaggctagcaatcttatgcagcgg
ctgaggaaccgagaccgtgagcgtgagaggaggagcggaggactgagagctgcatccaga
cgagaccgtgacagggactcgaggaggcagctctcgatcgacacacggccgttcagaccg
gcatcagaagggaaccccagtgatgaaccggagccactgccggctcacagacaagctcta
ggagagagactgtatccgcgagtacacgccatgcagccggcatttgccagtaaaatcaca
gggatgctgctggagctctctcccgctcagctgctgctgctcttggccagtgaggactca
ctcagagcccgtgtggaagaggcaatggagctcctcataactcacggaagggaaaatggc
gctgacagtatactggacctcggccttcttgacgctcctgaaaaagcacagcaggagaac
cgaaagagacacggttcgactcgcagtgtggttgacatggagctggatgaccctgatgac
ggggatgataacgctcctctgttttaccaacctggcaagaggggcttctactcgccccgt
ccaggcaagaacacggaggccaggctcaactgcttccgtaacatcggcaggatacttggc
ttatgtctgttacagaatgaactttgccccatcacactcaacagacacgtcatcaaggtt
ttgctcggcaggaaggtcaactggcatgactttgcattcttcgacccggtgatgtacgag
agcttgcggcagctgattcgtcactctcaaaccgaggaggctgaggccgtgtttgcagca
atggacctcgcctttgctatcgacctctgcaaagaggaaggatctggacaggtggagctc
ctggctggaggggtcaacatgcctgtgacgcctctgaacgtgtacgaatatgtgaggaga
tacgccgagcacaggatgctggtggtggcagaacagcctctgcatgccatgcggaagggt
cttctagatgtgcttccaaagaatgctctggaggatctgacagctgaggacttcagactg
ctggtcaacggctgtggagaagtcaacgtccagatgctcattagtttcacctctttcaat
gatgaatcaggtgagaatgcagagaagctgctgcagttcaaacgctggttctggtccatc
gttgagaagatgagcatgacggagcggcaggacctggtgtacttctggacgtccagcccg
tctctgccggcgagcgaagaaggattccagcccatgccctccatcaccatccggccgccg
gacgaccagcacctgcccaccgccaacacctgcatctctcgcctctacgtgccactttac
tcttccaaacagattctcaaacagaaacttttactagccatcaagaccaagaacttcggt
tttgtgtag
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integrated database retrieval system
