Garra rufa (doctor fish): 141342173
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Entry
141342173 CDS
T11039
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf04621
NOD-like receptor signaling pathway
grf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
141342173 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
141342173 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
grf04054
]
141342173 (nod1)
Pattern recognition receptors [BR:
grf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
141342173 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_6
NOD2_WH
LRR_4
AAA_16
AAA_22
AAA_30
NTPase_1
NPHP3_N
SLFN-g3_helicase
AAA_18
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
141342173
NCBI-ProteinID:
XP_073702670
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All DBs
Position
9:complement(1836767..1845634)
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AA seq
937 aa
AA seq
DB search
MGSHKGEGSHLKLLTLHRELLVEQVKNTQCVLDNLQMNGFICTEDIEIIQRSSTKTDQVR
KILELVQSKGEECSAYFIHILHEAYDAYIDLRPWFEEIRYTPLDSISVIPVANTDPISKY
CEKLRHELGRDTQFITSYSKSEETPLEDLYTDTQMELMNDRGESLGYLQSLDELLGDQGV
FNSTAETIFITGDAGVGKSIVLQKLQNLWSRRELKTRAKFFFKFRCRMFSAFKETDEISL
KDLIFKHNCYPDGDLDNEVFTYILRFPETVLFTFDGYDEIQSDFDLDNVPETVSPEEKTR
PLLLLMNLLCGKLLKGSLKILTARSGTEVQSRVIQKKVYMKGFSPEHLKRYTTLHFPEKE
HRTMVTDQLEANPHLCGLCSIPLFSWIILKSFKHLHSVYDNFELPDSCITLTNVFLLLSE
VFLGHSSARPGLLKRSTRCPAETFKAGEHKLSAFARLALQGLERGGLVFSMEEVLSCGLE
DEDLQFGFLRPASHYDGCGGSATFEFLHETLQAFLAAFSLVLDSKITPESILRFFSKCEY
KRSSHFSCLPCLGKSRPRDKDPFQTNFQFTNLFLCGLLSKPNAALLEHLVPPMLLKQKHK
MLKSYLSNSVKTHLKGLPRYPSTDIDGDKVHAMPNFLWMLRCIFETNSEDVAKMTANSIS
ADYIKIAFCNIYSADCSALNFVLHHRRKHLGVDMDNNNINDYGVKQLRPSFSKMTVVRFC
VNQLTDSGIEVLAEELTKHKIIKVLGLYKNNITDVGAKLVAKIIEECPHLKVVKLGCNNI
TGVGGKYLASAIHKSKSIFDIGMWGNTIGDEGADAFAEALKNHSSLTNLSLSANGITSHG
GRSLAKALKENTSLHIFWLIQNKISDDAASDFADAFRSNSALTHLMLIENEFTISGAKQM
SEGLTNNTTLKEINIKGNRVSEEEERLYEGDKRLRFH
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgggctctcacaagggtgaggggtctcacctgaagctcctgactttacaccgcgagctg
ctggtggagcaggtgaagaacacgcagtgtgttctcgacaatctccagatgaacggcttc
atttgcactgaagacatcgagatcatacaacgcagcagcaccaaaactgaccaggtacgc
aaaatcttggagctggttcagagcaaaggagaggagtgctcagcatatttcatacacatt
cttcacgaagcatacgatgcttacattgatctccggccttggtttgaagaaattcggtac
acaccattagactccattagtgtcataccagtggctaacacagacccaattagcaagtac
tgcgagaagctcagacatgagttgggaagagacactcagttcatcacgtcatactccaag
agcgaagagacgccgctggaggatctttacacagacactcagatggagctcatgaacgac
agaggtgagagtctgggatacttacagagtctggatgagcttctaggagaccaaggagtc
ttcaactcaacggccgagaccatctttatcaccggcgacgccggcgtaggcaaatccatc
gtccttcagaagctgcagaacctatggtccagaagggagctgaagactcgagcgaagttc
ttcttcaagttcagatgcagaatgttcagcgccttcaaggaaaccgacgagatctcgttg
aaggatttgatctttaaacataactgctatccagatggagatctcgataacgaggtcttc
acctacatcttacgattcccagagacggtgcttttcacctttgacggatatgatgaaatc
caatcggattttgatttggataacgttccagaaacggtttccccagaagaaaagacccgt
ccgcttttgcttctcatgaacttgctctgcggaaaattgctcaaaggttccctgaagatt
ctgactgcacgaagtggcaccgaagtccaaagcagagtgattcagaagaaggtctatatg
aagggattttcacctgaacacctgaagagatacacgactttgcatttccctgagaaggag
cacaggactatggtgacggatcagctggaggccaaccctcacctctgcggtctttgctcc
atcccgttgttcagctggatcatcctcaagagctttaagcatctccattcggtgtatgac
aactttgagctgccggattcttgcattacgctcacaaatgtcttcctgctcctttccgag
gtcttcctcggacactccagcgcacgtcctggtttgttaaaacgaagtacgaggtgtcct
gcggagacttttaaagctggtgagcacaagctttcggcgtttgctcgacttgccttgcaa
ggtctggaacggggcggacttgtcttcagtatggaggaagtgctatcctgtggattagaa
gacgaagaccttcagtttgggtttctgagacctgcttctcattacgatggatgcggagga
tctgcgacctttgagtttctccacgagaccctccaagccttcttagcagcgttctcattg
gtgctagactccaaaatcactcctgaatcaattctaagattcttctccaaatgcgaatac
aagaggtcgtcgcatttctcctgcttaccttgtttgggaaagtccaggcctagagataaa
gaccctttccaaactaacttccagttcaccaatttatttctatgcgggctcttgtccaaa
cccaacgcagcactcctggagcatctcgttccaccgatgttattgaagcagaagcacaag
atgctcaagtcttatctttccaacagcgtgaagacgcatctcaaaggccttcctcgatat
ccatccacagacattgatggtgacaaggtgcatgcgatgccaaatttcttgtggatgctg
aggtgcatatttgagacaaacagtgaggatgtggccaagatgactgccaacagcatatca
gcagattacattaagatcgccttctgtaatatatactctgccgactgcagtgcgttgaac
tttgtcctccaccatcgtaggaagcacctgggagtcgacatggataataacaacatcaac
gattatggcgtgaagcaactgagaccctctttcagcaaaatgacggtagtaagattttgc
gtgaatcagctgacggacagcggtattgaggttctggcagaagaactcaccaaacacaaa
atcattaaggttttgggtctttacaaaaacaacatcacagatgttggagccaaactagtt
gctaagatcattgaggaatgtccacacttgaaagtcgtcaagctgggctgcaacaacatc
actggtgtgggtgggaaatatcttgccagtgcaattcacaagagcaaatctatctttgac
ataggaatgtggggaaacaccattggtgacgaaggcgcagatgcgtttgcggaggctctg
aagaatcactccagcctgaccaacctcagtctctctgccaatggaatcacgtctcacggt
ggaagaagtctggcaaaagcactaaaggaaaacacaagccttcacatcttctggttaata
cagaacaaaatctctgatgatgcagcgtcagactttgcggatgccttcagatccaactct
gctctgacgcatctgatgctaatagagaacgagttcaccattagtggagccaaacagatg
tctgaaggcctaactaacaacactacactgaaggaaatcaatattaaaggaaaccgggtt
tctgaagaagaagagcgactctatgagggcgacaagaggcttcgcttccactga
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