Garra rufa (doctor fish): 141342301
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Entry
141342301 CDS
T11039
Symbol
col28a1b
Name
(RefSeq) collagen, type XXVIII, alpha 1b
KO
K23619
collagen type XXVIII alpha
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
grf01002
]
141342301 (col28a1b)
Peptidases and inhibitors [BR:
grf01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
141342301 (col28a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Kunitz_BPTI
VWA_3
Motif
Other DBs
NCBI-GeneID:
141342301
NCBI-ProteinID:
XP_073702828
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Position
9:6997719..7027756
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AA seq
1123 aa
AA seq
DB search
MNESMAKGFFQCLLLWLLVPAARCQNRRQSGETLNNLTSKPDRELVCTLEIAFILDSSES
AKGVLFDQEKTFVRSFSRRVAQMQVSEWHLKTRMALMYYSSSVHIDQRFRDWQDLDVFLS
KLEEVIYIGQGTYSTYAISNATQLFATETKEQSVRVALLMTDGVDHPRNPDIMMAVAEAK
GHNIKIFTIGLSNLAKDNVNSAKLRVVASSPAQQYFHSLTDTKLEERLLQQLEIIAKNEC
PRPPVCLCERGERGPPGAPGKKGEQGYEGAPGPKGLRGETGPSGLPGINGPEGRPGFKGE
KGDQGNCGPPGQKGHKGGEGPPGPRGPRGEQGLKGPPGDQGHEGPAGPKGDRGLIGASGP
PGDIGVGFPGPKGDKGNLGRPGPPGQVGIGQPGQPGPPGLTGAQGNPGPTGEGLPGPKGD
RGYVGPTGGRGPPGYGNKGEKGDVGPPGSAGPLGMPGRGIQGEKGIQGLAGPPGQRGNPG
IGLPGPKGEQGFPGERGAPGERGIGQPGPKGELGLRGVPGEPGVPGEDGGMGLKGEIGLP
GPKGQDGPPGRGLPGEKGIRGERGSRGLPGPFGPVGPAGAKGEPGIVGIPGVSGPPGRGI
PGPKGDPGPVGPPGLVGEPGIGIAGPKGEIGLRGPIGPPGLKGEGYPGPPGPSGLPGLTG
ETGPEGKGLPGPKGDRGPPGPTGPAGAPGLGQVGPKGSIGQTGPAGPTGLPGEGIQGPKG
DPGYQGLQGPRGFPGEGLPGQKGDRGLPGAQGRKGDRGSNGEQGPTGPPGNRGTKGEPGL
TREEIISLIRSICGCGRICRIQPLELVFVIDSSESVGPENFEVIKDFVNTVIDRTSVSQE
VTRVGVVLYSHINLVVTSIQERLSRDEVKAAVHRMPYIGEGTYTGSGIRKANEIFRFARR
GVKKVAVVITDGQTDHRDTVKLEDAVREAHSANITMLVIGVVNQSDPIYDDFKQELRSIA
SPPKEEHVFSIEDFRMLSEVESKLLHKLCENIDGSIFGSTFKPGAVGELFPYYDPRSDGT
DMISTIAPYRERDELNLLPDFSLTSLDRPRQDTTDRPLLIQDDYTAEERCLLPLDPGPCR
EYVVKWYFDPKANSCAQFWFGGCQGNKNQFDTQESCRKSCVKM
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaagcatggccaaagggttttttcagtgccttttgctttggctgcttgtacct
gcagccagatgccagaacagaagacagtctggagaaacactgaacaacctcacttcaaaa
ccggaccgtgaattagtatgcacgctagagattgcattcatcctggacagctcggagagt
gcgaagggcgttctgttcgatcaggaaaaaacatttgtgcgctccttcagcaggcgtgtg
gcacagatgcaggtgtctgagtggcatctgaaaacccgtatggcgctcatgtactacagc
agctctgtccacatcgaccagcgcttcagagactggcaggaccttgacgtcttcctgagc
aaattggaggaggtcatctacatcggccaaggaacgtactccacatacgccatatccaac
gccactcaactcttcgccactgagaccaaggagcaaagcgtgagggtcgccctgctcatg
accgacggcgtcgaccatccgcggaatcctgacatcatgatggcggtcgctgaggctaaa
ggccacaacattaagatcttcacaattggcttatcaaacctggcaaaggacaatgtgaac
agtgccaaactgcgggttgtagcgagcagcccagcgcagcagtactttcatagcctcact
gacaccaaactggaggaacggctcttgcagcagctcgaaataattgcaaagaatgaatgt
ccacggccaccggtgtgtttgtgtgagagaggtgaacgtggtccgccaggagctcctggt
aaaaaaggagagcaaggatatgaaggagcacctggtcccaaaggcttaaggggggaaacg
ggaccttctggtcttccaggaatcaacggtccagagggaagacctgggttcaaaggtgaa
aagggggatcaaggtaactgtggaccaccaggacaaaagggacataagggcggtgaaggg
cctccagggccaaggggccccagaggagagcagggtctgaaagggcctccaggagaccag
ggtcatgagggtccagcaggacctaaaggggatcgagggctgattggtgcatctggccca
ccaggagatattggagtcggattccccggtccgaagggagacaaaggaaacctaggaaga
ccaggtcctcctggtcaggtcggcataggacagccaggacaacctggtcctccaggttta
acaggagcacagggaaacccaggacctacaggcgaaggacttccagggccaaagggtgac
cgtggttatgtcggccctacaggtggacgtggacctccaggttacggaaataaaggtgaa
aagggtgatgtgggacctcctggatcagctggaccattaggaatgcctggcagagggatt
caaggagagaaagggattcagggactagctggtcctcctggtcaaagagggaatcctggg
ataggactcccgggaccaaagggagaacagggcttcccaggagaacgtggagcccctgga
gaaagaggaattggacaaccaggacccaaaggtgaactgggattacgaggagtaccaggt
gagccaggtgtaccgggagaagatggaggcatgggattaaagggtgaaataggcttacca
ggacccaaaggacaagatggacctcctggaagaggcctgccaggagagaaggggattcga
ggggagaggggctccagaggcctaccaggaccatttggaccagttgggccagcaggggca
aagggagaaccaggaatcgttggaattccaggtgtttctgggcctcccggaaggggcata
ccaggccctaagggagatccagggccggtcggtccaccaggtcttgttggagaaccaggg
ataggcattgcaggaccaaagggtgaaataggcttacgaggacccatcggaccgccagga
ctgaagggagaaggctatcccggcccacctgggccatcaggtctgccaggacttacagga
gagactgggccagaaggaaaaggtttacctggaccaaagggggatcgaggccctccgggt
cccacagggcctgctggagcaccaggtcttgggcaagtgggcccaaagggctccattggt
cagactggtccagctggtcctacaggattaccaggagagggcatacaaggaccaaagggt
gatcctggatatcaaggtttacaggggccaagagggtttcctggagaaggtctgccaggg
cagaagggggatcgtgggttacctggagcgcaaggacgtaaaggagacagaggaagcaat
ggagaacaaggacctacaggaccaccgggtaacagaggaacaaaaggagaacctggtctc
acgagagaggaaataatcagtctaatccgatctatttgtggttgtggtcggatatgcaga
atacagcctctggagctggtgttcgtgatagacagctctgagagcgtcggcccggaaaac
tttgaggttattaaagactttgtgaataccgtgatcgaccgcacgtcagtcagtcaggag
gtcacgcgtgtcggcgtggttctctacagccacatcaacctggtggtcacaagcatacag
gagaggttaagtcgcgatgaagtgaaagcagccgtgcacaggatgccctacattggggag
ggcacttacacaggaagtggcatcagaaaggccaacgagatcttccgctttgcccggcgc
ggagtgaagaaagtggcggtggttattacggacggccagacggatcatcgcgacacggtg
aagctggaggacgcggtcagagaggcccattcagccaatatcaccatgttggttataggg
gtggtgaatcaaagcgaccccatctatgatgattttaaacaagagctgaggtcaatagcg
tcaccgcccaaagaagagcatgtgttttccatagaggacttcagaatgctttctgaagtg
gaaagtaaactgcttcataagctctgtgagaacattgatggatcgatattcggcagtacc
ttcaagccaggtgcagttggagagttgttcccctactatgatcccagatcagatggcaca
gacatgatcagcaccatagcaccatatcgggaaagagacgagctgaacctcctcccagat
ttctctctcacatctttggaccggccaagacaggacacaactgaccgcccgctgctcata
caggatgattatactgcagaggagagatgcctattgcctctggatcctggaccgtgtcga
gagtacgttgttaaatggtattttgatccaaaggccaattcatgtgctcagttctggttt
ggaggttgccaaggcaacaaaaaccagtttgatactcaggagtcctgcagaaaatcctgt
gtgaaaatgtaa
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