Garra rufa (doctor fish): 141342336
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Entry
141342336 CDS
T11039
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
grf Garra rufa (doctor fish)
Pathway
grf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141342336 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141342336 (cnot3a)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141342336 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
141342336 (cnot3a)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
BOS1_GOSR2_MEM11-like_N
DUF4407
Motif
Other DBs
NCBI-GeneID:
141342336
NCBI-ProteinID:
XP_073702869
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All DBs
Position
9:19878545..19890192
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AA seq
893 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVDAIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPATLMA
TSPQGHIEDEMFLQSSSTPTSTTSSSPIPPSPATGTMEILEDKRGRSTDSEVSQSPVKNG
NPSLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSSLLGSFSSAVQQHAPQSQQQA
QVKLSSTSAPSNNTPSPPSHPTLPASTTSSLPSSSTPGPVTSNSQSQVSSVPGVEGSRLG
LGLGKGGVTVTSSSSGAQMPVLGLAGMSASLSTMAGLLSGSTPAPYAQAAAGGTAGSASS
GPVGSGSGSSGISVPSGGAGGANSGTTSNGTGTGASMGLLGSSPGHGTLTGGILNLVQGQ
SALQGSAQIPVSHVGTVPGGGTGESGLGGNGSSSVVSAVVGTNVAPARPPSGLKQNGATS
YSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQTLDNGPSLLSSITLPPSSPSPAFTDS
TPGGGSLLNGPHSYTLNTEAIKAPEPPSSLKAMAERAALGLTLDGEISSLHLPDRAPPGP
TTAPQPAVSEVNLPPSLGACPLGPTPLTKEQLYQQAMQESAWTHMPHPSDSERIRQYLMR
NPCPTPPFHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHT
KYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactacaaggtgagatagatcgatgtttgaaaaaagttgctgag
ggtgtcgaacagtttgaagacatttggaaaaagcttcacaatgcagccaatgccaaccag
aaggaaaaatatgaggctgatctcaagaaagaaattaaaaagctccagcggctacgagac
cagattaagacatgggtggcatccaatgagatcaaagacaaacggcagctagtggagaac
cgaaagcttatagaaacgcaaatggagcgatttaaggtggttgaaagagaaaccaagaca
aaggcctactctaaagaggggctgggcttggcacagaaagtggacccagcacagaaagag
aaggaggaaacggaacagtggctcacgaacacaatagacactttgaacatgcaggtggac
cagtttgagagtgaagttgagtccctctctgttcagacacggaaaaagaaaggagacaag
gagaaacaggatcgtattgaagaactgaagaggttaattgaaagacacaggtaccacatt
cgtatgctagagaccatcttgaggatgttggataatgattcgatccaggttgacgctatc
cataagatcaaagatgatgtggaatattacattgactcttcacaagacccagactttgaa
gagaacgagttcctttacgatgatctggacttggaggacataccggcaactttgatggcg
acgtctcctcagggccatattgaagatgagatgttccttcaatccagcagcacacccacc
tccaccacttcctcttcccctatccctccatctcctgctacaggcacaatggaaattttg
gaggataagagaggtcgatcgacagacagcgaagtcagccagtctcctgtgaagaatggc
aacccatctctttcgtccttctcctcatccgcctcctcaggctcctcctcctcctcctct
tcgctggtttctatggctactgttgtcggtggctgcacagcagtctccgggggcagcagc
ctgctgggaagctttagcagtgcagtgcagcagcatgctcctcagtctcaacagcaagca
caggtcaaactctcctcgacatcggcaccctccaacaacacacctagtccacctagccac
cccacgctaccagcctccacaacttcctctctgcctagttccagcacacccggcccagtt
acttccaattcccagtcccaggtttcatctgttcctggggttgagggctctagactgggt
ttgggcttggggaaagggggtgtgacggtgaccagcagcagtagtggggctcagatgcca
gttctgggcttggcaggcatgtctgcttctctcagcaccatggcagggcttctctcaggc
tctacccctgccccctacgcccaggcggctgcaggcggaacagcaggtagtgcctccagt
ggtccagtggggagtggcagtggtagttctggcatatctgtaccgagcggaggtgcaggg
ggagcaaactcgggcaccaccagtaatggtacaggaacaggggctagtatgggcctgcta
gggtccagtccgggtcacgggaccctaaccggaggaattctaaacctggtacaggggcag
tcggctctccaggggtctgcacagatacctgtgagccatgtgggcacagtgcctggagga
ggaactggagagagcggattgggtggaaatggaagcagttctgtggtgagtgcagtagtc
gggacgaatgtagcgcctgcaagacccccaagcggcctcaaacaaaatggagcaaccagt
tacagtgctgtggttgcggacaacacaccagactcctcgctcagcagtgccagccaatca
caaaacagccattcctcatcctcgagctcatcaaccaatcaaactctggataatggcccc
agtttattgagttctatcactctacccccctcctccccatcacctgctttcactgacagc
acacctggtggtgggagtctgctaaacggcccacactcctacacactcaacacagaagcc
atcaaggctcctgaaccaccaagctctctcaaagctatggcagaacgagcagcgctggga
ttgacactggatggagagatttcatcactacacctcccagatcgagccccacctggaccc
acaacggctcctcagcctgctgtttcagaagtcaacctaccgccatctttaggggcatgt
ccgttaggccccacccctctcactaaagagcagctttaccaacaggcaatgcaggagtca
gcatggacacacatgcctcacccgtccgattcagagagaatcaggcagtacctgatgaga
aacccctgtcctacaccgccattccaccaccaggtgcccccacatcattcggactctatt
gagttctaccagagattgtccactgaaacgctcttcttcattttctactacctggagggc
acaaaggcacagtacctgtcggctaaagcactgaagaagcaatcgtggaggttccacacc
aaatacatgatgtggtttcaacggcacgaggaacccaagaccatcactgatgagtttgaa
cagggcacgtacatttactttgactatgaaaagtggggccagagaaaaaaggaaggattt
acgttcgagtacagatacctggaggacagagacctgcagtga
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