Garra rufa (doctor fish): 141342465
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Entry
141342465 CDS
T11039
Symbol
trim24
Name
(RefSeq) transcription intermediary factor 1-alpha
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
grf01001
]
141342465 (trim24)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141342465 (trim24)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141342465 (trim24)
Protein kinases [BR:
grf01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
141342465 (trim24)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
141342465 (trim24)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4
PHD-1st_NSD
zf-C3HC4_2
PML_CC
zf-RING_2
DUF7121
Motif
Other DBs
NCBI-GeneID:
141342465
NCBI-ProteinID:
XP_073703014
LinkDB
All DBs
Position
9:complement(30572589..30596083)
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AA seq
963 aa
AA seq
DB search
MMDGSEKIESDDVVIIVENEAESKRDDEDQGSVKMVMMALMDVCPVCKLSFSSREPKLLP
CLHSFCKRCLPAHNTPASTASNAQQLNMIRCPVCQQECMDVEVLDNFFVKDSVEVPSSTM
EKSCQLCMSCDDNTEASGFCVECAEFLCVTCIEAHQRVKFTRDHTVQQIAEMSSEAMGAS
TQKPVFCDIHRQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYKNHKEHLENMTCQ
LQEKKKAIEDISNTINNGLQQVDENRKTVANEIKKSICNLIMEINRKGKLLVNQLEAITK
DHETLLKKQQQDVTSLSTHLDHVINFTKWATASNSGTALLYCKRLITCQIQYLMRAKCNI
SYVPQSLVRFQSRSGFWVSNVDLGSLVVEKTPVRHPGGPQPFPFQQMNPGPRPDGLQAGF
PGSQSQQQQQQQQQQQRQSTLAQLQMQVEKLSQHTSRQQPPNQWSWYHNMRLPGPHPHRP
MQGGSPSQTLPNMPQHGRRYGARSPPPMLQPTNLPPQTLRGLISNPNYPPKPMEVMPRTR
YPHSAAFSGGASLPSPQTLNQQNMQVTSYLNRRCEPSSMLTAQRPSYHPSHLSTPTERTV
QGRQMSVTSSEPKTSSGSWKRAEAPQSGPSNPSTKRRRRSSPGPVIVIKDEPEDDDVRFV
NTSAKASLPDSTGVQSQTPQGEQQSEKTPEADEDPNEDWCAVCQNGGELLCCDKCPKVFH
LTCHIPTLTASPSGEWYCTFCRDLTSPEMVYNINSSGESNSVKQDPDSEAFTPVDRRKCE
RLLLRLYCNELSTDFQEPVTPSSMPEYSEIIKMPMDLSVIRSKLEASGYKSTENFVEDVR
LIFKNCATFHKEDTEMASVGANLESYFEEQLKMLYPDRTFPGVKEESIAIASVCPEDKSP
LSKTPPQDTSPAEEIVKPSGEDLPQGEPHTKDTEKKPENFVPPAGSSPVDAETDSKATKD
PTS
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgatggatggaagtgagaagatcgagtctgacgatgtggtgatcatcgtggagaatgag
gcagaaagtaagcgtgatgatgaagatcagggcagtgtaaagatggtgatgatggctctg
atggacgtgtgtcccgtgtgtaagctcagcttcagcagcagagagcccaaactgctgccc
tgcctgcactctttctgtaagagatgcttgcctgctcacaatacacctgccagcaccgcc
agcaacgctcaacagttgaacatgatccgctgtccagtctgtcagcaggagtgtatggat
gttgaggtcttggataacttctttgtcaaggattctgtggaagtgccgagcagcacgatg
gaaaagagctgtcagctctgcatgagttgtgacgataacacagaggccagcggtttctgc
gtggaatgtgcagagtttctgtgtgtcacctgcatcgaagctcatcagcgtgtgaagttt
accagagatcacacagtccagcaaatagcggaaatgtcctcagaggccatgggtgcttcc
acgcagaagccagtcttctgcgacatccacagacaggagccgttaaagctattctgtgaa
acctgcgatcgcctcacctgcagagactgtcagctactaaaacacaaggaccataattac
caatttctagaagatgcatataagaaccacaaggaacatctggaaaatatgacctgccaa
cttcaagaaaagaagaaagctatagaggacatatctaatactataaataatggacttcag
caggtggatgaaaatcgcaagactgtggccaatgagattaaaaaatctatctgcaatctc
ataatggagatcaacaggaagggaaagttattagtcaaccaacttgaggcaatcacaaag
gaccatgaaaccctcctaaaaaagcaacaacaggatgtgacatcactctccacacatctt
gatcatgtgatcaacttcacaaaatgggccacagccagtaacagtggaacagccctcttg
tactgtaagcggttgataacatgtcaaatccagtacctcatgcgagcaaagtgcaacatc
tcatatgttccccagagcttggttcggttccaaagtcgatctggtttttgggtctcaaat
gtggatcttggttctttagttgtagagaaaactccagtgcgtcatcccggcggtccacag
ccatttcctttccagcaaatgaacccaggccccagacctgacggtcttcaggcagggttc
ccaggctcacagtcccagcaacagcagcaacagcagcagcagcagcagcggcagagcaca
ctggcccagctacagatgcaggtggagaaactctcccagcacactagccgccaacaaccg
cccaatcagtggtcatggtatcacaacatgcgcttaccagggccacatccacatagaccc
atgcagggtggatcaccatctcagacgttacccaacatgcctcaacatgggcggcgatat
ggtgcacggagccccccacctatgcttcagcccactaacctacctccacagacgctgagg
ggtctcatcagtaatcccaattaccctcctaaaccgatggaggtgatgccaagaacccgc
tatccacatagtgctgctttctctggtggagcttcacttccctctccacagacgctcaat
cagcaaaacatgcaggtgacgtcatatctgaacaggagatgtgaacccagctcaatgctg
actgctcaaaggcccagttatcatcccagtcacctctccacacctacagagcgaactgta
cagggaagacaaatgtccgtcacgtcatcagaaccaaagaccagttctggctcctggaag
cgtgctgaagccccccagagtggcccatcaaacccctccaccaagaggagacgcaggtcg
tctccagggccggttattgtcattaaagatgaaccagaggatgatgatgttcgctttgta
aacaccagtgctaaagccagtcttccagacagcacaggggttcagtctcaaacgcctcaa
ggtgagcagcaatcagagaagaccccagaagcagatgaagaccccaatgaggactggtgt
gcagtgtgccagaatggaggagaactgctctgctgcgacaaatgtcccaaagtcttccat
cttacctgccatatccccactctgactgcttctccaagtggtgagtggtattgtacgttc
tgccgtgacctcacctcacctgaaatggtgtataacatcaatagtagcggagaatcaaac
agtgtgaagcaggatccggattctgaggctttcactcctgtggatagaaggaaatgtgag
cgactgctgcttcgtctttactgcaatgaactcagcacagattttcaggagcctgtaaca
ccatcgtcaatgccagagtacagtgagataataaagatgccaatggacctgtcggttatc
agaagtaagctggaggccagcggttacaagagcactgagaactttgttgaggacgtcagg
ttgattttcaaaaactgtgcaacttttcacaaggaagacacagagatggccagtgtgggt
gctaatctagagagttactttgaggaacagctaaaaatgttgtatccagaccggacattt
cctggcgtaaaagaggagagcattgccattgcttctgtgtgtccagaggataaaagtccc
ttatcaaagacacctccacaagacacttcccctgcagaggagattgtgaaaccttctggt
gaagatctccctcagggggaaccgcatactaaagacactgagaagaagccagagaacttc
gtccctcctgcaggatccagtcctgtagatgctgaaacggacagtaaagcaactaaagat
ccaacttcctga
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