Garra rufa (doctor fish): 141342480
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Entry
141342480 CDS
T11039
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
grf Garra rufa (doctor fish)
Pathway
grf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141342480 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141342480 (smarcc1a)
03036 Chromosome and associated proteins [BR:
grf03036
]
141342480 (smarcc1a)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141342480 (smarcc1a)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
141342480 (smarcc1a)
PBAF complex
141342480 (smarcc1a)
GBAF(ncBAF) complex
141342480 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
141342480
NCBI-ProteinID:
XP_073703037
LinkDB
All DBs
Position
9:11671177..11695619
Genome browser
AA seq
1098 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQAGAGSSIGRKKDGGPSSKFWESSETVSQLETVRLWIGKHY
KKYVQTDSPTSKTLAALVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKPGGALCHILG
SAYKFKSEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNSLTRPIVYIVSDMEQKQANK
LKDIIKRHQGTITEDKSKATHIIYPSPAQVEEEEWLRPVMRKDKQVLVHWGNYPDSYDTW
VSTSDVDGDVEDPPSSEKPWRVHAKWVSDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPG
EEVSSRTPDRKDRKSLVAGKKRRRSPSPPSTPAESRKKGKKGNPGSQGRRRGHQNDDEQD
EDLTKDLEDPSPVPGMEEVTLPKNVNQKKDSENTPVKGGTVADLDDQEDDSLASGGKEED
EQSKTEVNRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAESRP
LPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPTDLQNFGLRTDI
YSKKNPKGKGAAGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVR
EEVPTELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTEPTETEKMDTDSD
SQPDKAESKDEAEKPSESAEKPTETEKEKNETTEKSEPQEEEESEGGESKTAEKDKEEDM
ETTEEGKEVEEEKEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAVEERKIKSLVA
LLVETQMKKLELKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQ
MEQQAAAQQNAGGHHGPPPHGPPSHGPPPGMHPGHPGHPGPGFPPMHHPMGPHHAPQTGP
MVGPGQPMPGQPMPGRMMSGPPPVGPPQGGMPPMMGARHPGPPNGMYPVPPPTAQPDGMP
PGPVGPSVSAPPPRAAEN
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatcggccggccag
gcgggcgccggttcctcgatcggacgaaaaaaagatggagggccttcttccaaattttgg
gagagctcggaaacggtgtctcagttggagacagttcggctgtggatcggcaaacattat
aagaagtatgtccaaacggactctcctacaagcaaaactttggctgcgctggtggtgcag
ttgctgcagtttcaggaggatgcatttgggcgtagagtcagcaatcctgcccttaccaaa
ctaccagcaaagagctttttggatttcaaacctggaggagccctttgccacattctgggt
tctgcatacaagttcaaaagtgagcagggctggagaaggtttgatctgcagaacccatcc
agaatggatagaaatgtggagatgttcatgaccattgagaagacgcttgttcagaacaac
tctttgacccgaccaattgtgtacattgtgtctgacatggagcaaaaacaagccaacaag
ctcaaagacatcattaagagacatcagggaaccatcactgaggataagtcaaaggccact
catattatttacccctccccagcccaggtggaagaagaggaatggctacgtcccgtcatg
cgcaaagacaagcaagttttggttcactggggcaattaccctgacagttatgacacatgg
gtatcaacaagtgatgtggatggagatgttgaggatccaccaagctctgagaaaccttgg
agggtgcatgcaaaatgggtcagcgacacagatgctttcaacgagtggatgaatgaggaa
gattacgaagtggatgagaacaagaagcctgtgagtttccgccagcggatcttcccaggg
gaggaagtgtcttcccgtacacccgatcgcaaggaccgcaagtccctggttgccggtaag
aagaggaggcgctctccatccccacccagcacccctgcagagtcccgcaaaaagggcaag
aaaggcaatcctggatcacaggggaggcgccgtggacatcaaaatgatgacgagcaggat
gaagacctcacaaaggacctggaagatccctcccctgtgccagggatggaggaagttaca
ttgccaaaaaatgtcaatcagaaaaaggacagtgagaacacacctgtgaaaggtggaaca
gttgctgatttagatgaccaggaagatgattcgctagcgtctggaggcaaggaggaggat
gaacagagcaaaacagaagtcaatcgcctgatcgattctgaggacaacgtgaccgaacag
acccatcacatcattatacccagctatgctgcctggtttgactacaacagtatacatgaa
attgagaggcgtgccctgccagagttctttaatggcaaaaacaaatctaagactccagag
atctatctggcttatcgtaacttcatgattgacacataccggctgaatcctcaggagtac
ctgacctccacctcctgtaggagaaacctcactggagatgtgtgtgcggtcatgagagtg
catgcctttttggagcagtggggtttggtgaactaccaggttgatgctgagagcagaccc
ctccccatgggccctccaccaacaccacatttcaacgtcctggctgatactccctctggt
ttggtgccgctgcaccaccgccccccacaggttccccctgctcagcagatgctgaacttc
ccagaaaagggcaaagacaagccaactgacctgcagaactttggccttcgtacagatatt
tactcaaagaagaatcccaagggtaaaggggcggcaggtggcagagagtggactgagcaa
gaaacattgcttctgttggaggctctggagatgtataaggatgactggaataaggtttcg
gagcacgtgggcagtcgtacgcaagatgagtgcattttgcactttttgcggttgcccata
gaggatcagtacctggagagctctgaagcttcgctaggccctttggcttaccagccgatt
cccttcagccaatcaggaaatcccgtcatgagcactgttgcattccttgcctctgtggtt
gacccacgtgtggcggcagctgctgctaaagcagctcttgaggagttttcgcgtgtgcgt
gaagaggttcccacagagctggtggaggctcatgtgaaaaaggtacaggaggccgcacgc
agcacaggaaaagtagaccctgcatttggcctcgagagcagtggcattgccggtacagcg
cctgaggaaccagaaaagactgaacctacagagactgagaagatggacactgactcggat
tcccagcctgataaggcggagtcaaaggatgaagcagagaagcccagcgagtctgcggaa
aagccgacagagacagagaaggaaaagaatgagactacagagaaatctgagccacaggaa
gaggaagagagtgagggaggagaatccaagacagcagaaaaggacaaagaggaagacatg
gagaccacagaggaaggaaaggaggttgaagaggagaaggaggaaggaaagaaaaagctt
gagttggatatcggagagggcaacattgccactgctgccgctgctgctctggcctctgct
gccaccaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctctcgtggct
ctgctggtagagactcagatgaagaagctggagctcaaactcaggcactttgaggagctg
gagaccatcatggatcgtgagaaagaagcactggagctccagaggcagcagcttttgaca
gagcgacaggcgttccacatggaacagttgaagtacgctgagatgaaggctcgtcagcag
atggagcagcaggcagctgcacagcagaatgcaggaggacatcacggaccacctccacat
ggcccaccttcccacggcccacctccaggcatgcacccgggacatcccggtcaccccggc
cctggttttccccccatgcaccatcccatgggtccccaccatgcccctcagacaggacca
atggttggaccaggccagcccatgccaggtcagcctatgccaggccgaatgatgtctgga
cctccaccagttggacccccgcagggtggcatgccgcccatgatgggagctcgacatccc
ggaccacccaacggcatgtacccagttccacctccaaccgcacagcctgatgggatgccc
cctggcccagtgggaccttctgtatctgcgccccctcctcgtgctgctgaaaactaa
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