Garra rufa (doctor fish): 141342552
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Entry
141342552 CDS
T11039
Symbol
bcan
Name
(RefSeq) brevican core protein isoform X1
KO
K06795
brevican
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
grf00535
]
141342552 (bcan)
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141342552 (bcan)
04091 Lectins [BR:
grf04091
]
141342552 (bcan)
Proteoglycans [BR:
grf00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
141342552 (bcan)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
141342552 (bcan)
Lectins [BR:
grf04091
]
C-Type lectins
Lecticans
141342552 (bcan)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
hEGF
ig
EGF_2
Motif
Other DBs
NCBI-GeneID:
141342552
NCBI-ProteinID:
XP_073703123
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Position
9:complement(21461857..21474259)
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AA seq
1291 aa
AA seq
DB search
MFLHILLRAICLFVLSSSAILSPAADETTFLQVNIPDSPPVPAILGGSLTLPCLVSLSRT
PSLGRHAVLTQPRVKWSFLSSNRETEILVARGERVKVSELYKGRASLLNYAASSADLTLR
LDGLIHNDTGFYRCEVQHGLEDAHDQAQVKVKGVVFHYRHTSSRYAFTFDEAKDACEDIG
AQIASPEQLLAAYHSGYEQCDAGWLSDRSVRYPIQMPREGCFGDMDGLPGVRNYGVVDND
ELYDVYCYVENIYGEVFHGSSQQRFSLLEAKTYCEQQGAQLATTGQLYAAWNDGLNHCSP
GWLADGSVRYPIVTPRERCGGPEPGVKTVYRFSNQTGFPEPHTHYDTYCFRANSNSQTAP
PIDYMATEPDDTEQHIVTLADSHEEYSVDQITQPSENEAQGAVESFSIYSTQTASEPEEH
NHTTSPQFDEDSTYRDSTTPTSTEKYLESTEVTWEKVESVPEIYMEPKHKDSTQEGEPEI
KASAIDGVKSSNHRHYQPMPDTNLQPGEPIDFIPPTEAQPETTEEPLSQPKEIDGSKHFQ
PMPETNLEDEDKDHVTNEISMTTEGTTLEYDSSSATVTQHTPIQSSPSTSLPEGSTLEEN
AGNFTETPEPDEDLGLFTHTTQSTSTSTSSTEGWLEGSGEDLTLISTQKTQHLATSDKSE
TYGASTPETMTESFSLTHMNSISTTFKPRHEDSSPDHHNAEETSTETLSVSVGAVDDASD
YSNVSTTLKETETSEGSADHDDILPVTLLTTPAPHLLGTLTTHGPVQVEINSTQEVEGVL
SEITTPSSLGIVEEEFEKVEQEGLGEEPNQQVTTSTELNSSTVSLSVDASDEVEDEDESS
GEREPAGNASSVIKHPYSNVATITPSNLTDMQDHNVTNSDNDDNQASTVGPTKSLEVTFL
PHGTQSPIWQTVDSSTNPGEFRADVEFSGEAALTTDDIQTFEESDSTNAPINEQTTQTQK
LSTTTANNEDNDNDDDNDNDYELITKANTNNLEDENDVNTTPELSTLPARPTQRVLVRTG
YISDACLENPCKNGGTCVDSGAGHRCLCLPTYGGDFCETDLEHCEPGWEKFQGFCYKHFT
KRQKWEVAEQHCRMCGGHLVSVMSPEEQEFINDKYREYQWTGLNDKTIEGDFRWSDGNPL
LYENWYRGQPDSYFLSGEDCVVMVWYDDGRWSDIPCNYQLSYTCKKGIAAFCGQPPLVLH
AKMFGLRQLKYRANSQVRYYCEPGFIQRQNPIITCQSNGQWEEPKITCSPVGPAYSNGEL
VTWPGQNKEIIIEETTTKTTTPEYVDIKWNF
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgcatatactgctgcgtgccatctgcctctttgtcttgtcatcttctgccatc
ctcagccctgcagcagatgagactacattcctacaagtgaacattcctgatagcccccca
gtgccagccattttggggggctccttgacactgccctgcctggtgagtctctcccggacc
ccatctttgggccgccatgctgtactgacccagccacgagtcaaatggagctttctttca
tcaaacagagagacagagatcttagtggcccgtggtgagcgggtaaaggtgagtgagttg
tataaaggcagggcatcactgctgaattatgcagcctcttcagctgatctcaccctcaga
ctggatggactgatacacaatgatacaggcttctaccgctgtgaagtccagcatggcttg
gaggacgctcatgaccaggcccaagtcaaagtaaaaggtgttgtcttccactaccgccat
acctcaagtcgctacgcctttacttttgatgaggccaaagatgcatgtgaggatattgga
gctcagattgcttctccagaacagctgctggctgcgtaccacagtggttatgagcagtgt
gacgctggctggctttcagatcgctctgttagatacccaatccagatgccacgtgaaggg
tgttttggagacatggatggattaccaggcgttcgaaactatggcgtggtggataatgat
gaactatatgacgtgtattgctatgtggagaacatttatggggaggtttttcatgggtca
tcccaacagcgctttagcttgttggaagcaaagacttactgtgagcagcagggagctcag
ctagcaaccactggccaactgtacgctgcatggaatgatggtctgaaccactgcagtcct
ggctggcttgctgatggaagcgttcgctaccctattgtgacccctcgtgaacgatgtgga
ggccctgaacctggtgtcaagacagtttatcgttttagcaatcaaacaggattccctgaa
ccacacactcactatgacacctactgcttcagagcaaacagcaactctcagacagcccca
cctatagactatatggcaaccgagccagacgacaccgagcagcatattgtgactttagca
gattcccatgaggagtatagtgtggatcagatcactcaaccttcagaaaatgaagctcag
ggggctgttgagtccttctccatttacagcacacagactgcttcggaacctgaggaacac
aaccacaccacaagccctcagtttgatgaagatagcacctacagagactccaccacccca
accagcacagagaaatatcttgagtccactgaggtcacctgggaaaaagttgaatctgtt
ccagagatttacatggaaccaaagcacaaggattccacacaagaaggagaaccagaaata
aaagcatcagcaattgatggtgtgaagagcagcaatcatagacactaccaaccaatgcca
gataccaacctacagccgggagagcccatcgacttcatcccacctacagaagctcagcca
gagacaacagaggaaccgctctcccaaccgaaggagatagatgggtccaaacacttccaa
cccatgcctgaaaccaacctggaggatgaggataaagatcacgtgactaatgagatctcc
atgaccactgagggtactacactagaatatgactcaagcagtgccaccgtaactcaacat
actcctatccagtcaagtccctcaacatctctacctgaaggttctacattagaagaaaat
gcaggaaatttcacagaaactccagagccagatgaagacctgggtctttttacacacaca
actcagtccacctcaacaagcacatccagcactgaaggttggttggagggttccggtgag
gatttgaccttgatatccacacaaaaaacccaacatctggccacctcggataaatcagag
acatatggagcatctacacctgaaactatgacagagagcttctcgttaacacatatgaac
agtattagcacaacttttaaacccagacatgaagacagttctccagaccatcacaatgct
gaggagacctcaactgagactctttctgtgtctgttggtgcagttgatgatgctagtgat
tattcgaatgtgagcacgacactgaaggaaactgaaacttctgaaggctctgccgatcat
gatgacatcctgccggtcacactgttgaccacccctgcacctcatctgttgggcacattg
accacacatgggcctgtacaggtagaaatcaattcaacacaggaagtggaaggtgtcctc
tctgaaatcacaactccatctagtcttgggattgtggaagaagaatttgagaaggtggag
caagaggggcttggagaggaacctaatcaacaagtcaccacatccactgagcttaatagt
tctactgtatctttaagtgttgatgccagtgatgaggttgaggatgaggatgagtcttct
ggagaaagagaacctgcaggaaatgcgtcttcagttattaagcatccatactcaaatgtg
gccaccatcactccttctaatctaacagatatgcaagaccacaatgtaacaaatagtgat
aacgatgataatcaggccagcactgtgggacccacgaaaagtctggaggtaacgtttctt
cctcatgggacccaaagtcccatctggcaaactgtggactcttccacaaacccaggggag
ttcagagcagatgttgaattcagtggggaagcagcacttaccacagatgacatccaaacc
tttgaggaatctgactccaccaatgcacccatcaatgagcagacaacgcaaacccaaaaa
ctatccactacgacagccaacaatgaagataatgataatgatgatgataatgacaatgat
tatgaactcattactaaagcaaacacaaacaatttggaagatgagaatgatgtcaatacc
acacctgagttatccactctacctgccagacctacacagagagtgttggtcaggacaggc
tacatttcagatgcatgtctggagaacccttgtaaaaatggaggcacatgtgtggatagc
ggagcaggtcataggtgtctctgtctacccacttatggaggagacttttgcgagacagat
ctagaacactgcgaaccaggctgggaaaagttccaagggttttgttacaagcatttcacc
aaaaggcagaaatgggaggtggcagagcagcactgtcgcatgtgtggaggtcacctggtc
tctgttatgtcacctgaggaacaggagtttatcaatgataaatacagggagtatcagtgg
acgggtctcaatgacaaaaccattgagggagatttccgttggtcagatgggaacccactg
ttgtatgagaactggtatcgtggacaaccagacagctacttcttgtcaggggaggattgt
gttgtcatggtgtggtacgatgatggccgatggagtgatatcccttgcaactaccagctg
tcctacacctgcaagaaaggcattgcagcattctgtggtcaaccccctcttgtgctgcac
gctaagatgtttggacttcgtcaactaaagtacagggccaattcacaggtgcgctactac
tgtgagccaggtttcatccagagacaaaaccctatcatcacatgtcagagcaacggacag
tgggaggaacctaagatcacttgttcaccagtgggaccagcgtactcaaatggagaactg
gtaacatggccaggtcagaacaaggaaataatcatagaagagacaacaacaaaaacaaca
acacctgaatatgtggatataaaatggaacttttaa
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